BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF02RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig834 1661 0.0
>3x_Contig834
Length = 2891
Score = 1661 bits (838), Expect = 0.0
Identities = 879/888 (98%), Gaps = 4/888 (0%)
Strand = Plus / Plus
Query: 49 cataacggaaggtgctgctcttaaacacaaaccattggaataaggtctttaatagcgagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cataacggaaggtgctgctcttaaacacaaaccattggaataaggtctttaatagcgagt 655
Query: 109 tgttaatgaccttatatactttattcctggttggcaaatcgaagaaatcattatattctt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgttaatgaccttatatactttattcctggttggcaaatcgaagaaatcattatattctt 715
Query: 169 tcaacacatcaataatagctgaaatgtaaatttcattctctgcatcggtaaattcgtcaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tcaacacatcaataatagctgaaatgtaaatttcattctctgcatcggtaaattcgtcaa 775
Query: 229 tcaggtgaaagtgtgaatcgaagtaatcagcgaaagatgaaagccaatacctgttgacta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tcaggtgaaagtgtgaatcgaagtaatcagcgaaagatgaaagccaatacctgttgacta 835
Query: 289 attcataaaacttggagtcacccactgcctccttcaagagaataacgttttgagggttaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 attcataaaacttggagtcacccactgcctccttcaagagaataacgttttgagggttaa 895
Query: 349 cagtcattgaaggttcccaatttttcaaaaactgctcgaactccagcaggataagtgctt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 cagtcattgaaggttcccaatttttcaaaaactgctcgaactccagcaggataagtgctt 955
Query: 409 ttaatgactttaaatccctttctcccaaaatgagatgcaactcgccgtatgtcaccatga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 ttaatgactttaaatccctttctcccaaaatgagatgcaactcgccgtatgtcaccatga 1015
Query: 469 attcatctgacagaaattgaggagaaagttgtatttcgagagccggcataatgtagcggg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 attcatctgacagaaattgaggagaaagttgtatttcgagagccggcataatgtagcggg 1075
Query: 529 aaaggaagtgttccctgcagctaataaagtcaataataggtaaatactgaacggttattt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 aaaggaagtgttccctgcagctaataaagtcaataataggtaaatactgaacggttattt 1135
Query: 589 gacgtagcatcctcgaatatccggtatttgaatctaaccaataacataagggttgataca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 gacgtagcatcctcgaatatccggtatttgaatctaaccaataacataagggttgataca 1195
Query: 649 ccaacctataaatgctgctttgtgtttcgttcaaaatatatccagattccattctatatg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 ccaacctataaatgctgctttgtgtttcgttcaaaatatatccagattccattctatatg 1255
Query: 709 aaagaaaccttattgctgccctcaaatggttcaacttttcgacctgcatatctgccgtat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 aaagaaaccttattgctgccctcaaatggttcaacttttcgacctgcatatctgccgtat 1315
Query: 769 taattccacgattaagctctttgagcaagaacatggtacagagcttatcaagtatgtcat 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 taattccacgattaagctctttgagcaagaacatggtacagagcttatcaagtatgtcat 1375
Query: 829 cgtcatttattttcta-gcattcagtnatctgatcttcaagac-gggttgcgaaagtntg 886
||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct: 1376 cgtcattta-tttctaggcattcagtaatctgatcttcaagacttggttgcgaaagttgt 1434
Query: 887 ttttccttgactttttct-aaacactttgtagcctttcctcttggtgt 933
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1435 ttttccttgactttttctaaaacactttgtagcctttcctcttggtgt 1482
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6698
Number of Sequences: 1807
Number of extensions: 6698
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)