BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF03FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1694 1074 0.0
>3x_Contig1694
Length = 18020
Score = 1074 bits (542), Expect = 0.0
Identities = 609/624 (97%), Gaps = 6/624 (0%)
Strand = Plus / Plus
Query: 87 taagagaaaaatcgatcacgtgattgttagaaaacacgtgacttactattattgtcaacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15719 taagagaaaaatcgatcacgtgattgttagaaaacacgtgacttactattattgtcaacc 15778
Query: 147 gtcctgtcggtgtattcaagatgggattatgtggagaaggaattgacacttgcaagcagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15779 gtcctgtcggtgtattcaagatgggattatgtggagaaggaattgacacttgcaagcagc 15838
Query: 207 ccacgacagatataaatcctttctaaaaagatattggaatgtcacattacctcggttcac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15839 ccacgacagatataaatcctttctaaaaagatattggaatgtcacattacctcggttcac 15898
Query: 267 cgcaatgcgcgctttgatgctcaaaatattttcaaagttttgcagcctcctcatccttca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15899 cgcaatgcgcgctttgatgctcaaaatattttcaaagttttgcagcctcctcatccttca 15958
Query: 327 agacggacttccatcttgttcggatttgataatgtcatctgcatgcaaatgagatcgcga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15959 agacggacttccatcttgttcggatttgataatgtcatctgcatgcaaatgagatcgcga 16018
Query: 387 aatgtatagaaaggctgatgataaatgaattgcgtcgtatgattgatataattatcatac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019 aatgtatagaaaggctgatgataaatgaattgcgtcgtatgattgatataattatcatac 16078
Query: 447 cctctgaaacttgtcatcaattcaccagggtggaatgaactgatctactattgttggaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16079 cctctgaaacttgtcatcaattcaccagggtggaatgaactgatctactattgttggaag 16138
Query: 507 agagagacagtgatgatctgtcgaggagctttttttcgatctaattntaacctcagcgga 566
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 16139 agagagacagtgatgatctgtcgaggagc-ttttttcgatctaattttaacctcagcgga 16197
Query: 567 acaatgggggcgagttatggctggtgaaaaaagcagactacttagcaccaataaactcag 626
||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16198 acaat-ggggcgagtaatggctggtgaaaaagcaagactacttagcaccaataaactcag 16256
Query: 627 aaaccttccttgngggttctttggttgatcgaagaatacgaggatgcgaccagccacgaa 686
|||||||||||| |||||||| ||||||||||| ||||||||||||||| ||| |||||
Sbjct: 16257 aaaccttccttgt-ggttcttt-gttgatcgaag-atacgaggatgcgacgagcaacgaa 16313
Query: 687 gtcagggcgtatttagtgtgtttt 710
|||||| |||| ||||||||||||
Sbjct: 16314 gtcaggccgta-ttagtgtgtttt 16336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6771
Number of Sequences: 1807
Number of extensions: 6771
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)