BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF03RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1560 0.0
>3x_Contig1731
Length = 24233
Score = 1560 bits (787), Expect = 0.0
Identities = 882/901 (97%), Gaps = 10/901 (1%)
Strand = Plus / Plus
Query: 47 tgaagtctttcatcaaggaaaaatacccagttggtgaaaacttcgacacccaattcaacc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20923 tgaagtctttcatcaaggaaaaatacccagttggtgaaaacttcgacacccaattcaacc 20982
Query: 107 tggctgtcaagagagggttggagactgagttcttctctcaaccaaagggacctgctggtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20983 tggctgtcaagagagggttggagactgagttcttctctcaaccaaagggacctgctggtt 21042
Query: 167 ctatcaaattggtgaaaaaaccaaaggctgagtccaagaaggcagctccttctgctgtta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21043 ctatcaaattggtgaaaaaaccaaaggctgagtccaagaaggcagctccttctgctgtta 21102
Query: 227 agaaatcttctactaccaagaagccagctgccaccaccaagaagagctctactagttcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21103 agaaatcttctactaccaagaagccagctgccaccaccaagaagagctctactagttcaa 21162
Query: 287 aaaaggcttctgctggtaaggtcgtcaagaaggagtcttcaaagaagaccactgctaaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21163 aaaaggcttctgctggtaaggtcgtcaagaaggagtcttcaaagaagaccactgctaaga 21222
Query: 347 aagcagctaccaagaaggctcctgctaagaagactgccgttaagaagtccaagaaataaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21223 aagcagctaccaagaaggctcctgctaagaagactgccgttaagaagtccaagaaataaa 21282
Query: 407 gttaatcaaatttcgaatcactttatttttttacctcctgtgaatatcgattcacctaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21283 gttaatcaaatttcgaatcactttatttttttacctcctgtgaatatcgattcacctaac 21342
Query: 467 ttcttaatgcgtgtgttgtattttactaccttcctttgatacttctgtctacccttaata 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21343 ttcttaatgcgtgtgttgtattttactaccttcctttgatacttctgtctacccttaata 21402
Query: 527 attcagttcaaatcggttatttttgtgttatttaaatcaattataccctttatcaccact 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21403 attcagttcaaatcggttatttttgtgttatttaaatcaattataccctttatcaccact 21462
Query: 587 ctattattttcttccttgaaaaattgtctttctgttgaaatatattccaccccttcctgt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21463 ctattattttcttccttgaaaaattgtctttctgttgaaatatattccaccccttcctgt 21522
Query: 647 cctttaccctacttattccttttgactacattcaccatcatttattcc-acccaaa-ctc 704
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 21523 cctttaccctacttattccttttgactacattcaccatcatttattccaacccaaacctc 21582
Query: 705 ctatctcttactgnggtctctctgttactcctcctttcatcttttctttttactcacgga 764
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 21583 ctatctcttactgtggtctctctgttactcctcctttcatcttttcttttaactcacgga 21642
Query: 765 aatttt-aaatgagaac-caccacttagattattgactagtgtaatatttacatttancg 822
|||||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct: 21643 aattttaaaatgagaacacaccacttagattattgactagtgtaatattaaca-ttagcg 21701
Query: 823 gnatttctaaaacaatccgctcttnctttattgattatctcgaattaaatcatttaaaat 882
| ||||||||| |||||||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct: 21702 g-atttctaaatcaatccgctctt-ctttattga-tatctcgaataaaatcattaaaaat 21758
Query: 883 ttccaatcaacaggtagataccacctaccctttatcggacatgtttcctcatccattgct 942
||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 21759 ttcaaatcaacaggtagataccaccta-cctttatcgtacatgtttcct-atccattgct 21816
Query: 943 g 943
|
Sbjct: 21817 g 21817
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7984
Number of Sequences: 1807
Number of extensions: 7984
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)