BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF04FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 981 0.0
>3x_Contig1807
Length = 66587
Score = 981 bits (495), Expect = 0.0
Identities = 544/555 (98%), Gaps = 4/555 (0%)
Strand = Plus / Minus
Query: 88 aataattgttatgatcaggggttatctgtctgggttcattactaaaatactctgaagtgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59429 aataattgttatgatcaggggttatctgtctgggttcattactaaaatactctgaagtgg 59370
Query: 148 aacgaaacaatgcaacgaagaatagaaggtgatgactgtgcggtatgattcaatcagttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59369 aacgaaacaatgcaacgaagaatagaaggtgatgactgtgcggtatgattcaatcagttt 59310
Query: 208 ataattcgttatttcactaaacataaaattgactatatggaaagagagcaaggtcttaca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59309 ataattcgttatttcactaaacataaaattgactatatggaaagagagcaaggtcttaca 59250
Query: 268 tatgggtgactggtaaccagacaccaagataaaaagaattgagcattgatagtgacctca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59249 tatgggtgactggtaaccagacaccaagataaaaagaattgagcattgatagtgacctca 59190
Query: 328 tattgttgtggagatgttttattttagctcaactctcttgaagaaaccaccttggtctct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59189 tattgttgtggagatgttttattttagctcaactctcttgaagaaaccaccttggtctct 59130
Query: 388 gcaagcttcttgatgggctttgattaatctttgagcagctaatggatcatcaacttcggt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59129 gcaagcttcttgatgggctttgattaatctttgagcagctaatggatcatcaacttcggt 59070
Query: 448 aggttcttcccaggacaagtactcgttagtgtagtttgatttgaaatcagttgggaggat 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 59069 aggttcttcccaggacaagtactcgttagtgtagtttgatttgaaatcagttggaaggat 59010
Query: 508 atccaaacgcttaccgtaagcagtaacctttcttcagtcacgatgggacgttgtacaagg 567
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 59009 atccaaacgcttaccgtaagcagtaacctttctccagtcacgat-ggacgttgtacaagg 58951
Query: 568 aaaaaggagaagttagcg-aacatttttggaattgcttgtaacttaatgggtcgttcatt 626
|| ||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||| |
Sbjct: 58950 -aagaggagaagtaagcgaaacatctttggaattgcttgtaactcaatgggtcgttcaat 58892
Query: 627 tga-gcttgaagtca 640
||| |||||||||||
Sbjct: 58891 tgaggcttgaagtca 58877
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8295
Number of Sequences: 1807
Number of extensions: 8295
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)