BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF04RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1340 0.0
>3x_Contig1807
Length = 66587
Score = 1340 bits (676), Expect = 0.0
Identities = 741/755 (98%), Gaps = 6/755 (0%)
Strand = Plus / Plus
Query: 47 atcgacacctttgactgccacaagactcaaaagttcaggtgcataaattgtgattgcatt 106
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5827 atcgacacctttgactcccacaagactcaaaagttcaggtgcataaattgtgattgcatt 5886
Query: 107 tgcaccagaccattgacccaaaatttggaccaaacatgcgataacaaagaacctgtatct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5887 tgcaccagaccattgacccaaaatttggaccaaacatgcgataacaaagaacctgtatct 5946
Query: 167 aacagatttgacaaaaattatctcttttaccatatcaaggtaaccagtgcctgacatagt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5947 aacagatttgacaaaaattatctcttttaccatatcaaggtaaccagtgcctgacatagt 6006
Query: 227 ctctttctcttgaataatctggtatctgatatcagcgacttcacctgcaatgaaagggtg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6007 ctctttctcttgaataatctggtatctgatatcagcgacttcacctgcaatgaaagggtg 6066
Query: 287 cgtttcggataaattacgcaatttggccaagtttataattgccttgtcatccttgcccat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6067 cgtttcggataaattacgcaatttggccaagtttataattgccttgtcatccttgcccat 6126
Query: 347 tttcattaaccatctcggactctcaatacaccatataaatgatccaaccaagataagtcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6127 tttcattaaccatctcggactctcaatacaccatataaatgatccaaccaagataagtcc 6186
Query: 407 tgcaagaacaattttgattgaagttggcgcgacccactgcaatctactggtattagagac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6187 tgcaagaacaattttgattgaagttggcgcgacccactgcaatctactggtattagagac 6246
Query: 467 atggagagctgtcccatagtttgcaaaatatgccaacataataccaaaatacacggcacc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6247 atggagagctgtcccatagtttgcaaaatatgccaacataataccaaaatacacggcacc 6306
Query: 527 ggcaaacagacatcctgtcaaacctctgatttgttttacagagacttccgatagataaac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6307 ggcaaacagacatcctgtcaaacctctgatttgttttacagagacttccgatagataaac 6366
Query: 587 tggcccaatggtggttgtctggccgat-gcaagaccttcgataaagtc-tcctgcatata 644
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct: 6367 tggcccaatggtggttgtctggccgatggcaagaccttcgat-aagtcttcctgcatata 6425
Query: 645 gttgtccgacatnttttgatgttatttggattattgccccaacgattcataaaacacaaa 704
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6426 gttgtccgacattctttgatgttatttggataattgccccaacgattcataaaacacaaa 6485
Query: 705 cgccttgcaacgcctttattctaccaaaattctccacagtatacatagctattcagggta 764
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct: 6486 cgccttgcaacgcctttattctaccaaatttctccacagtatacatagcta-tcaaggta 6544
Query: 765 ccaccgatttgattcccactggaaccattgaagtg 799
||||||| ||||| || ||| ||||||||||||||
Sbjct: 6545 ccaccga-ttgatcccaact-gaaccattgaagtg 6577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6064
Number of Sequences: 1807
Number of extensions: 6064
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)