BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZF05FM1.SCF screened BAC_end
         (1026 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1793                                                        1029   0.0  

>3x_Contig1793 
          Length = 40499

 Score = 1029 bits (519), Expect = 0.0
 Identities = 546/551 (99%), Gaps = 3/551 (0%)
 Strand = Plus / Minus

                                                                        
Query: 85   cttaggtgtggaagtgctgatatactgaactatattcatcctgtacacaagtttttgatt 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4149 cttaggtgtggaagtgctgatatactgaactatattcatcctgtacacaagtttttgatt 4090

                                                                        
Query: 145  ctttcttctcttgattcaaatcacttcaatccgcaaattgctaagaaataaacagtcaag 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4089 ctttcttctcttgattcaaatcacttcaatccgcaaattgctaagaaataaacagtcaag 4030

                                                                        
Query: 205  ccattgacgaagtccatatattcaattcattttctcctataaaatgtcacctatcgcaca 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 ccattgacgaagtccatatattcaattcattttctcctataaaatgtcacctatcgcaca 3970

                                                                        
Query: 265  cttattgaatgccagtaccggcactgattcaggtagtcatttgcgcgatatccatggtca 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3969 cttattgaatgccagtaccggcactgattcaggtagtcatttgcgcgatatccatggtca 3910

                                                                        
Query: 325  tcacgatagtcacgatcacggttcggaggagcaggctgtcagtcctttgtctcctcgctc 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3909 tcacgatagtcacgatcacggttcggaggagcaggctgtcagtcctttgtctcctcgctc 3850

                                                                        
Query: 385  gtatccatctcctcgcagcaacagcagtagtagctgcgaagagagtcaatcctcagctgg 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3849 gtatccatctcctcgcagcaacagcagtagtagctgcgaagagagtcaatcctcagctgg 3790

                                                                        
Query: 445  ggttctagctaacattcataccggaccggcttcccctcatggaaaggcatgtgttgcgtc 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3789 ggttctagctaacattcataccggaccggcttcccctcatggaaaggcatgtgttgcgtc 3730

                                                                        
Query: 505  ttcacccctttccaccactggtatgagatctgcctctacgccttctagctctgacgaaga 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3729 ttcacccctttccaccactggtatgagatctgcctctacgccttctagctctgacgaaga 3670

                                                                        
Query: 565  tactgtttcatttgcaccgctgccaatgaaaaggcttgtagttgggagttcactttctcc 624
            ||||| |||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||
Sbjct: 3669 tactg-ttcatttgcaccgctgccaatggaaaggc-tgtagtttggagttcac-ttctcc 3613

                       
Query: 625  cgaactacttt 635
            |||||||||||
Sbjct: 3612 cgaactacttt 3602


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,662
Number of Sequences: 1807
Number of extensions: 15662
Number of successful extensions: 311
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)