BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF05RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1275 0.0
>3x_Contig1649
Length = 14442
Score = 1275 bits (643), Expect = 0.0
Identities = 726/746 (97%), Gaps = 6/746 (0%)
Strand = Plus / Minus
Query: 84 cgaacaatacctttcaaacaattcgccatcattgatcttttcaagcaccaaatacgtttg 143
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5618 cgaacaat-cctttcaaacaattcgccatcattgatcttttcaagcaccaaatacgtttg 5560
Query: 144 aatctgtgttttgctgaccggttcaacaaatctatctatgagtttaactatattcggatg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 aatctgtgttttgctgaccggttcaacaaatctatctatgagtttaactatattcggatg 5500
Query: 204 ttggatagatagaaggatcttagtctcttctgtgaatttttttgttcttttgtcatcgtc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 ttggatagatagaaggatcttagtctcttctgtgaatttttttgttcttttgtcatcgtc 5440
Query: 264 attttgttgaggatggaatatctttaccgcgacggtctcaccagtttccttattcctagc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 attttgttgaggatggaatatctttaccgcgacggtctcaccagtttccttattcctagc 5380
Query: 324 ctccttgacaatcgcgtaatggccagttcctaattctttcccagctaagtatttgtcgaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 ctccttgacaatcgcgtaatggccagttcctaattctttcccagctaagtatttgtcgaa 5320
Query: 384 aaaggatctgggctgctcccttgttcttgatagtttcttggttgtattttgactactgaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 aaaggatctgggctgctcccttgttcttgatagtttcttggttgtattttgactactgaa 5260
Query: 444 taaaggttttctgaaaaccccatcataatcgctgttttgcgtagtttgtgaaatttgagt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5259 taaaggttttctgaaaaccccatcataatcgctgttttgcgtagtttgtgaaatttgagt 5200
Query: 504 ggctgttgtttgacttagtccattttctgtaagtgtagcatatttgaaaagatatgaaca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 ggctgttgtttgacttagtccattttctgtaagtgtagcatatttgaaaagatatgaaca 5140
Query: 564 gcttttcccgaatactattttatcaccattctttaaaacatagtcttttctgatgagcct 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5139 gcttttcccgaatactattttatcaccattctttaaaacatagtcttttctgatgagcct 5080
Query: 624 atcaccggtcacaaacgttccattacggcttttatcggtgatatttgatcattttacgct 683
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5079 atcaccgttcacaaacgttccattacggcttttatcggtgata-ttgatcattttacgct 5021
Query: 684 tgaattcgctnatttgtacctcaatggtgtaccagtcagcatgttagggttgagtatttc 743
||||| || | ||||||||||||||||||||| |||||||| || ||||||| || ||
Sbjct: 5020 tgaatccgttaatttgtacctcaatggtgtacagttcagcatg-tatggttgag-atatc 4963
Query: 744 ttgctctgaaagtacgatgttccatggatcgacttcttccaacggaaattggcggaatgg 803
| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct: 4962 tggctctgaaagtacgatgttacat-gatcgacttcttccaacggaaattgtcggaatgt 4904
Query: 804 caactaactgaaattttcggttctct 829
|||||||||| ||||||| |||||||
Sbjct: 4903 caactaactg-aattttctgttctct 4879
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7607
Number of Sequences: 1807
Number of extensions: 7607
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)