BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF06FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig848 1148 0.0
>3x_Contig848
Length = 3091
Score = 1148 bits (579), Expect = 0.0
Identities = 690/716 (96%), Gaps = 10/716 (1%)
Strand = Plus / Plus
Query: 86 acctatcgttcccaatcttgattgcgttctacatcggtcacaagatctggaagaaaaact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 acctatcgttcccaatcttgattgcgttctacatcggtcacaagatctggaagaaaaact 510
Query: 146 ggaagttgtttatcagagccaagaatattgatatcgatactggtagaagagaaactgaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaagttgtttatcagagccaagaatattgatatcgatactggtagaagagaaactgaca 570
Query: 206 tcgaagctttgaaacatgaaattgccgaagaaaaggcttttatcgcttccaaaccattct 265
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcgaagctttgaaacaagaaattgccgaagaaaaggcttttatcgcttccaaaccattct 630
Query: 266 actacagaatgtacaagttctggtgttgaataccagtattaacgaatgctaattgggaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 actacagaatgtacaagttctggtgttgaataccagtattaacgaatgctaattgggaag 690
Query: 326 ggctgagcccttatcaattattacgctgaactgattttctgaacctttgatctttcgttc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggctgagcccttatcaattattacgctgaactgattttctgaacctttgatctttcgttc 750
Query: 386 ttccactctcagaaagagaatggaacgggaccattcccttatgtatactaaatataatat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttccactctcagaaagagaatggaacgggaccattcccttatgtatactaaatataatat 810
Query: 446 ctaaggatatctagtagcgttagaaaataaaaaaataattgaaaatagaagaactggtga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctaaggatatctagtagcgttagaaaataaaaaaataattgaaaatagaagaactggtga 870
Query: 506 atggagttcgtgatgaactaaacctgagtgttaagaattagttattggatattattgctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 atggagttcgtgatgaactaaacctgagtgttaagaattagttattggatattattgctg 930
Query: 566 gcagtttaaaaaaaaactgggctttacagtattacaggcagttggggaagatcagaanna 625
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 931 gcagtttaaaaaaaaactgggcttaccagtattacaggcagtt-gggaagatcagaaaaa 989
Query: 626 gag-aaatgggaaaaaag-aagccctgcggggggctcngaccccccaacctgttgattaa 683
||| |||||||||||||| |||||||||||||||||| || |||||||||| |||||||
Sbjct: 990 gagaaaatgggaaaaaagaaagccctgcggggggctc-gaacccccaaccttgtgattaa 1048
Query: 684 gagtcacacgcgcttacgaattgcg-cagcaaggcctaaattcttgagaaacgaagcacg 742
||||||||||||| ||| |||||| ||||||||||||| ||||||||||||| ||||
Sbjct: 1049 gagtcacacgcgc-taccgattgcgccagcaaggcctaatttcttgagaaacg-agcaac 1106
Query: 743 gtcagggtagctcatttgcttaatcaaaggcatgtggaattggaatcttttttttt 798
||||||||||||||||||||| ||||||| |||||| ||| | ||||||||||||
Sbjct: 1107 gtcagggtagctcatttgctt-atcaaagtcatgtg--atttgtatcttttttttt 1159
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,489
Number of Sequences: 1807
Number of extensions: 13489
Number of successful extensions: 189
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)