BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF06RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1427 0.0
>3x_Contig1801
Length = 57606
Score = 1427 bits (720), Expect = 0.0
Identities = 778/793 (98%), Gaps = 4/793 (0%)
Strand = Plus / Plus
Query: 48 tatgaatactaaataataaattccgatacaaaagactgggaaaagagatagattagaagt 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 35771 tatgaatactaaataataa-ttccgatacaaaagactgggaaaagagatagattagaagt 35829
Query: 108 catcttagttactacttagataaactatccgatccgttttgaggattaatttgttaggtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35830 catcttagttactacttagataaactatccgatccgttttgaggattaatttgttaggtt 35889
Query: 168 cctgttttgcacttacatttgctgcgtttttttttcaacctaatttcttaatctaagaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35890 cctgttttgcacttacatttgctgcgtttttttttcaacctaatttcttaatctaagaaa 35949
Query: 228 ggtgtgtttttgaagatatacggtctcacatccagccagactttgtttcgattgagcgtc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35950 ggtgtgtttttgaagatatacggtctcacatccagccagactttgtttcgattgagcgtc 36009
Query: 288 taaaaagaactataagcggcactggttatattggggttgagatttgtaattgttgctcac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36010 taaaaagaactataagcggcactggttatattggggttgagatttgtaattgttgctcac 36069
Query: 348 gttgatcttattagcattcattttgtggttagtctctaagaagatgccgttcatacctaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36070 gttgatcttattagcattcattttgtggttagtctctaagaagatgccgttcatacctaa 36129
Query: 408 gaataagaagaaatggacgaagagttttaaagtatggatctctgagctcaagttctattt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36130 gaataagaagaaatggacgaagagttttaaagtatggatctctgagctcaagttctattt 36189
Query: 468 acacaagagaaataagttctctatgctgttactcatcagtgtgataatattccttctcta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36190 acacaagagaaataagttctctatgctgttactcatcagtgtgataatattccttctcta 36249
Query: 528 tgaattgacttcttctcttccatcaaagagtagcgctggttataggattccaaagacaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36250 tgaattgacttcttctcttccatcaaagagtagcgctggttataggattccaaagacaca 36309
Query: 588 tgggatgtatcaaaatgaagtgcaatcctcgactccattgatcttccccagcgttcaaga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36310 tgggatgtatcaaaatgaagtgcaatcctcgactccattgatcttccccagcgttcaaga 36369
Query: 648 tcatggcacactaaaagagttangtgtcgaaagtctattcacactgagaattcgatgttg 707
|||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct: 36370 tcatggcacactaaaagagttaggtgtcgaaggtctattcacactgagaa-tcgatgttg 36428
Query: 708 atgggaacaganagtacgtttttcaaaccggaagataca-caatgacttgagcanaaagg 766
||||||||||| |||||| |||||||||||||||||||| |||||||| |||| |||||
Sbjct: 36429 atgggaacagagagtacg-ttttcaaaccggaagatacaccaatgactgaagcagaaagg 36487
Query: 767 aaagagctggctgaaaccgattagaagaaaatcgtgaagagaacctttttagatcatgta 826
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 36488 aaagagctggctgaaaccgataagaagaaattcgtgaagagaacctttttagatcatggt 36547
Query: 827 aaattgttttaca 839
|||||| ||||||
Sbjct: 36548 aaattggtttaca 36560
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7419
Number of Sequences: 1807
Number of extensions: 7419
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)