BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF07RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1263 0.0
>3x_Contig1778
Length = 27694
Score = 1263 bits (637), Expect = 0.0
Identities = 750/784 (95%), Gaps = 3/784 (0%)
Strand = Plus / Minus
Query: 49 tccaagtttgtcaaactgagaagatggtgaaacccttgtgcagaagatgtcattaccgat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16661 tccaagtttgtcaaactgagaagatggtgaaacccttgtgcagaagatgtcattaccgat 16602
Query: 109 ggagcatattatactagtggattccaagttcgtcggaactgatattaatttcgatttatc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16601 ggagcatattatactagtggattccaagttcgtcggaactgatattaatttcgatttatc 16542
Query: 169 tgaaggaagaatctgtctaagatgactaaccactgaaaaatcattaattggtatggtggg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16541 tgaaggaagaatctgtctaagatgactaaccactgaaaaatcattaattggtatggtggg 16482
Query: 229 ttcataaacagaagccatgaattcctctttgtctttctttgtcatatcagactctggttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16481 ttcataaacagaagccatgaattcctctttgtctttctttgtcatatcagactctggttt 16422
Query: 289 tcttcttgcgttgacaacatatttggggagatatgtaatggacccatcatctaattgtaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16421 tcttcttgcgttgacaacatatttggggagatatgtaatggacccatcatctaattgtaa 16362
Query: 349 aagtatagctttcgtagtaattccaaatttagttttggataatgcaagtgaatgtatgat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16361 aagtatagctttcgtagtaattccaaatttagttttggataatgcaagtgaatgtatgat 16302
Query: 409 ctgagggaagtaatatgcgttgctaatcgttgccggtttcacaatatcgtctagcgggtt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16301 ctgagggaagtaatatgcgttgctaatcgttgccggtttcacaatatcgtctagcgggtt 16242
Query: 469 cactaagctccctggaagggatctcctttcatcaggaaccagcgattcgtaaaactcaac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241 cactaagctccctggaagggatctcctttcatcaggaaccagcgattcgtaaaactcaac 16182
Query: 529 gactacaagcttttgttccggtattggagctgaactg-aataactgtatatgcaccagtg 587
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16181 gactacaagcttttgttccggtattggagctgaactgaaataactgtatatgcaccagtg 16122
Query: 588 ttctcctatcacaaggtttactggccnggtttagtccacaaactcctcatgcttaacagt 647
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 16121 ttctcctatcacaaggtttactggcaaggttaagtccacaaactcctcatgcttaacagt 16062
Query: 648 gtaaagagtctggcccgtaaccgtgttcaatatttttaggtacaaggaaattcttttcag 707
||||||||||||||| |||||||||| ||||||| ||| |||||| |||||| | |||
Sbjct: 16061 gtaaagagtctggccagtaaccgtgtcaaatatttctagtaacaagg-aattctctacag 16003
Query: 708 aattgcccattaaatagcctccataattaggatttgagaccttgtatataacagttctgg 767
|||||||||| |||||||||||| ||||||||| | |||||||| |||||||||
Sbjct: 16002 aattgcccatcaaatagcctccaatattaggattgaggtacttgtataatacagttctgt 15943
Query: 768 tttctaggattggaccttaaacctggaaccgggcctttttctttgacaacttgaccacca 827
|| ||||||||| ||| |||||||||||| ||||||| ||| ||||| | |||||| ||
Sbjct: 15942 ttcctaggattgcacc-taaacctggaacgtggcctttatctctgacagcatgaccaaca 15884
Query: 828 atac 831
||||
Sbjct: 15883 atac 15880
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5927
Number of Sequences: 1807
Number of extensions: 5927
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)