BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF09FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig864 1334 0.0
>3x_Contig864
Length = 2808
Score = 1334 bits (673), Expect = 0.0
Identities = 784/814 (96%), Gaps = 8/814 (0%)
Strand = Plus / Minus
Query: 85 ttctacctgcttcgaaacaggtttattcttttttttctattctgataaatggtaaatgaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 ttctacctgcttcgaaacaggtttattcttttttttctattctgataaatggtaaatgaa 1943
Query: 145 gtcaagaaacgtacgaagccgtgcatatcatgcaaactatcgaaggttaaatgtgaatat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 gtcaagaaacgtacgaagccgtgcatatcatgcaaactatcgaaggttaaatgtgaatat 1883
Query: 205 accgaagctttaccttgcaaaaggtgtttgaaactcggtatccactgtcagttcgtacga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 accgaagctttaccttgcaaaaggtgtttgaaactcggtatccactgtcagttcgtacga 1823
Query: 265 gacgtacgaagggtgcaagtaccggtgccggttcccccagcggttcctgtacctgcccct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 gacgtacgaagggtgcaagtaccggtgccggttcccccagcggttcctgtacctgcccct 1763
Query: 325 gtaccagctccggggaatggaatggcagtgccccatagaatatcaaatataattccagtt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 gtaccagctccggggaatggaatggcagtgccccatagaatatcaaatataattccagtt 1703
Query: 385 gtgccaccagtgcatggaatgggcagccagacaagtaatcggacaataccacaagcaggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 gtgccaccagtgcatggaatgggcagccagacaagtaatcggacaataccacaagcaggt 1643
Query: 445 ggacagccggtagcacccccttcaagagaaaatggcgattcctggacaaacaatattgat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 ggacagccggtagcacccccttcaagagaaaatggcgattcctggacaaacaatattgat 1583
Query: 505 aataggttgaataattttgaatcgttacttgagacaatgctttccgcattgtacaaaaat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 aataggttgaataattttgaatcgttacttgagacaatgctttccgcattgtacaaaaat 1523
Query: 565 aatatagaacagcaatcacgaatgggacaaatgcanaaagagatcaattcacaagccagg 624
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1522 aatatagaacagcaatcacgaatgggacaaatgcaaaaagagatcaattcacaagccagg 1463
Query: 625 ttgacccaaagctttttatcttcgcagaanaataatagacgaaatgccgntaagctgccg 684
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 1462 ttgacccaaagctttttatcttcgcagaaaaataatagacgaaatgccgtaaagctgccg 1403
Query: 685 aacttatctcagttggaacaatcttttanaaacgtcacaatggcagcagcaactgcctct 744
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1402 aacttatctcagttggaacaatc-tttagaaacgtcacaatggcagcagcaactgcctct 1344
Query: 745 ggcaccgcaaccgcnacagcaacag-nacagcaaacgcagtctcattctttgctccaatt 803
| ||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct: 1343 gcaaccgcaaccgcaacagcaacagcaacagcaaccgcagtctcattcttcgctccaatt 1284
Query: 804 tttcaaaatggaactt-cataacgcccttgccgggttaatggaaaaccca-cttttatga 861
|| ||||||||||| |||| |||| ||| |||| ||||||||| |||| |||| ||||
Sbjct: 1283 tt--caaatggaacttccataccgcctttg-cggggtaatggaaaccccacctttaatga 1227
Query: 862 acacaagc-gagatacgttactactagtactcat 894
||| ||| ||| |||||||||||||||||||
Sbjct: 1226 acaacagcagagtagcgttactactagtactcat 1193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5828
Number of Sequences: 1807
Number of extensions: 5828
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)