BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF09RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1288 1469 0.0
>3x_Contig1288
Length = 8015
Score = 1469 bits (741), Expect = 0.0
Identities = 869/897 (96%), Gaps = 12/897 (1%)
Strand = Plus / Plus
Query: 51 accaggtctgcttgacatcaacggtaaagaaatcaaaaagtcaatgaccccaactgattt 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 accaggtctgcttgacatcaacggtaaagaaatcaaaaagtcaatgaccccaactgattt 2490
Query: 111 acgtcgcttagaagaagagaatatgaggcaaagattaaatgttgatttggccccattcta 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2491 acgtcgcttagaagaagagaatatgaggcaaagattaaatgttgatttggccccattcta 2550
Query: 171 cgagaaagttttgaaatgggactacaaaagaaccagtgagtacccaaccgatacagaaac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2551 cgagaaagttttgaaatgggactacaaaagaaccagtgagtacccaaccgatacagaaac 2610
Query: 231 atcctactctgacgtgaaggactcattttcatcggtctctgattatcaaaaagtcatgga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2611 atcctactctgacgtgaaggactcattttcatcggtctctgattatcaaaaagtcatgga 2670
Query: 291 accgcttttgctgctagaatgttggcagggattgtgctcagctcgagacagggaagaaca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2671 accgcttttgctgctagaatgttggcagggattgtgctcagctcgagacagggaagaaca 2730
Query: 351 gaaaagctttagtttcattgtaggaaataggacggttgtttctgacttttacgaggtata 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2731 gaaaagctttagtttcattgtaggaaataggacggttgtttctgacttttacgaggtata 2790
Query: 411 tgcatcaatcaacaaaaatgttgttcgtgacacaggtatcaatgactcggatttaattgt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2791 tgcatcaatcaacaaaaatgttgttcgtgacacaggtatcaatgactcggatttaattgt 2850
Query: 471 tcttggctatttccccgactcttcttcttcaaagccattgacagataaagaattcaaacg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2851 tcttggctatttccccgactcttcttcttcaaagccattgacagataaagaattcaaacg 2910
Query: 531 atcaaatcacacttgtttagccaaaattaaagagataaagaactcgaaaggtgaaaatat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2911 atcaaatcacacttgtttagccaaaattaaagagataaagaactcgaaaggtgaaaatat 2970
Query: 591 ggaccttacattcaggattcatcgcagtcataaattctcaaatcttttaactttacgttc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2971 ggaccttacattcaggattcatcgcagtcataaattctcaaatcttttaactttacgttc 3030
Query: 651 tgaaattcatgcntttgaagtcatgcaaatgaccacagtcgaaagaagatacacatcttt 710
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3031 tgaaattcatgctttgaaagtcatgcaaatgaccacagtcgaaagagaatacacatcttt 3090
Query: 711 aaaaggtttgccctattatgatctc-taaaacaaatactc-aagctc-accattcgtt-c 766
||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||| |
Sbjct: 3091 aaaaggtttgccctattatgatctcttaaaacaaatactcaaagctcaaccatccgttcc 3150
Query: 767 agagaata-tagtagcactgaagtttatagaatcaaagc-aacttccacctaaatacatt 824
|||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 3151 agagaatattagtagcactgaagttaatagaatcaaagcaaacttccacctaaatacatc 3210
Query: 825 cccagc-acagcatttttgagtacggtaacta-ccaagggttttcacttattcaa-gccc 881
|| || |||||| |||||||||||||||||| |||||| |||||||| |||||| ||||
Sbjct: 3211 ccaggcaacagcaattttgagtacggtaactacccaaggtttttcactaattcaaggccc 3270
Query: 882 tnncgntactggtaaaa-caaaact-tcttgagtattgtcgg-tacttcatttcaaa 935
| || ||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct: 3271 tcccggtactggtaaaaccaaaactatcttgagtattgtcggatacttcatttcaaa 3327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7849
Number of Sequences: 1807
Number of extensions: 7849
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)