BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF10RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1166 0.0
>3x_Contig1531
Length = 8774
Score = 1166 bits (588), Expect = 0.0
Identities = 642/656 (97%), Gaps = 3/656 (0%)
Strand = Plus / Minus
Query: 46 ttgtcttctttctcggatttgccgataactggaaatgtattggattactgtgaaaaacta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 ttgtcttctttctcggatttgccgataactggaaatgtattggattactgtgaaaaacta 1788
Query: 106 ggggaatgggtaataacggaaaagccgtcattaaccttagat-aatacctttcgctactg 164
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1787 ggggaatgggtaataacggaaaagccgtcattaaccttagatcaatacctttcgctactg 1728
Query: 165 tcacttacagaagaatcaaaatatcaatttgatagcagagttcatacttggctgtttgat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1727 tcacttacagaagaatcaaaatatcaatttgatagcagagttcatacttggctgtttgat 1668
Query: 225 caaattgtgcagcatccggatatcttatctggaagcgtttcgccaaaggtcgctcagttc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 caaattgtgcagcatccggatatcttatctggaagcgtttcgccaaaggtcgctcagttc 1608
Query: 285 atgaagaccgaaagcttccgtgaagctatgtctaacagactgatatcacaatatgaggcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 atgaagaccgaaagcttccgtgaagctatgtctaacagactgatatcacaatatgaggcc 1548
Query: 345 gaattgaaaaattggaatgcccacaaagacgacgaaatcaaggaacctgaattgatagat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 gaattgaaaaattggaatgcccacaaagacgacgaaatcaaggaacctgaattgatagat 1488
Query: 405 ccatatgatacagacaagaagacttcaactctggtaaaagatattacaatgtacgaatta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 ccatatgatacagacaagaagacttcaactctggtaaaagatattacaatgtacgaatta 1428
Query: 465 ggactcactgactctagaaagattcttcttcatgattgcaaagagaaagtatctgaactg 524
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1427 ggactcactgactctagaaggattcttcttcatgattgcaaagagaaagtatctgaactg 1368
Query: 525 ctagtacatctaaaatcgttcacaagtgaaactcagtatcgacagattaccgataaactc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1367 ctagtacatctaaaatcgttcacaagtgaaactcagtatcgacagattaccgataaactc 1308
Query: 585 aacccaatgctggagaaaga-cgtattagaatattggaagataacattggagattaacca 643
| || ||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 1307 agccaaatgctggagaaagagcgtatcagaatattggaagataacaatggagataaacca 1248
Query: 644 agttattgcgcattcaatatgaaatcgccttgtcgatgccctcctgctagaaagaa 699
|||||| |||||| ||||||||| || |||||||||||||| |||||||||||||
Sbjct: 1247 agttatagcgcatccaatatgaatacg-cttgtcgatgcccttctgctagaaagaa 1193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9919
Number of Sequences: 1807
Number of extensions: 9919
Number of successful extensions: 126
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)