BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG01FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig798 357 3e-98
3x_Contig332 234 3e-61
>3x_Contig798
Length = 3073
Score = 357 bits (180), Expect = 3e-98
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 87 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 2953
Query: 147 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 3013
Query: 207 acattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagaggtca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 acattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagaggtca 3073
>3x_Contig332
Length = 1517
Score = 234 bits (118), Expect = 3e-61
Identities = 191/210 (90%), Gaps = 4/210 (1%)
Strand = Plus / Minus
Query: 503 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 1455
Query: 563 agtctgaagtcaataatcgtattaaaatccattaccatc-gtgaacgtggctcaattgac 621
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 1454 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 1395
Query: 622 gtaaaactt-cgatttttgaaccgcttattaattcca-tattgagccttatcagtaccct 679
||||||||| ||||||| | |||| ||||| | | | ||||||||| |||||||| ||
Sbjct: 1394 gtaaaacttccgattttgaacccgcatattattccgattattgagccatatcagta-cca 1336
Query: 680 tgagaaggaactttttaaaaaattggctgg 709
|||||||||| |||||| |||||||||||
Sbjct: 1335 tgagaaggaagcttttaagaaattggctgg 1306
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7310
Number of Sequences: 1807
Number of extensions: 7310
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)