BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG02FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 583 e-166
3x_Contig56 311 1e-84
>3x_Contig1719
Length = 15804
Score = 583 bits (294), Expect = e-166
Identities = 464/502 (92%), Gaps = 14/502 (2%)
Strand = Plus / Plus
Query: 86 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2905 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 2964
Query: 146 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 3024
Query: 206 ttaccatggctgtttgcattgattcatagttatgacaacatttcaatttctttatttctt 265
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3025 ttaccatggctgattgcattgattcatagttatgacaaca-ttcaatttctttatttctt 3083
Query: 266 ttcaactttgtttcggaacatctttcatgaggttttagtatattgctctgaatagggaat 325
| |||| || ||||||||||||| |||||| || |||||| |||||||| ||| | ||
Sbjct: 3084 tcgaactctg-ttcggaacatcttcaatgagg-ttaagtata-tgctctgattagtg-at 3139
Query: 326 ttgtcaatggtttattac-acaagagactttcttgaat-aagctttttgatgattaacga 383
|| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 3140 atgatcatggtttattacaacaagagactttcttgaataaagctctttgatgattaacga 3199
Query: 384 cattttcgtgagccattgcacggttgtgtcagcattccttgttcgtttaatttggaaat- 442
||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 3200 catatcagtgagccattgcacggttgtgtcagcattcctggttcgtttaatatggaaatc 3259
Query: 443 attat-aattactgtagtccaaatactcgttttcatcatatcagcactgtcactgacatt 501
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 attataaattactgtagtccaaatactcgttttcatcatatcagcactgtcactgacatt 3319
Query: 502 attaacagtagtctcttcccacga-gtaaaatattgtgcttgcatcctgtcctcttggag 560
|| | |||||||||||| |||||| |||||||| ||||||||||||||||| || || ||
Sbjct: 3320 ataaccagtagtctctt-ccacgaggtaaaata-tgtgcttgcatcctgtcttc-tgtag 3376
Query: 561 cctgttctttttgctccgaaaa 582
||||||| || |||||||||||
Sbjct: 3377 cctgttc-ttctgctccgaaaa 3397
>3x_Contig56
Length = 1175
Score = 311 bits (157), Expect = 1e-84
Identities = 176/181 (97%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 86 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 267
Query: 146 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 327
Query: 206 ttaccatggctgtttgcattgattcatagttatgacaacatttcaatttctttatttctt 265
|||||||||||| ||||||| ||||||| |||| |||||| |||||||||||||||||||
Sbjct: 328 ttaccatggctgattgcatttattcatatttattacaaca-ttcaatttctttatttctt 386
Query: 266 t 266
|
Sbjct: 387 t 387
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,242
Number of Sequences: 1807
Number of extensions: 18242
Number of successful extensions: 259
Number of sequences better than 1.0e-20: 2
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)