BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG02RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1450 1614 0.0
>3x_Contig1450
Length = 9648
Score = 1614 bits (814), Expect = 0.0
Identities = 870/882 (98%), Gaps = 5/882 (0%)
Strand = Plus / Plus
Query: 50 ttgtacattataatatggttcatactccaccaaaaacaacatcttttgactacctaaata 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 ttgtacattataatatggttcatactccaccaaaaacaacatcttttgactacctaaata 3319
Query: 110 ttttcctagcacacgtagggcatttcttagatcttttctttgattatcagagctccttaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3320 ttttcctagcacacgtagggcatttcttagatcttttctttgattatcagagctccttaa 3379
Query: 170 tagatgagaattgtaatattcaatcatcgtattggcatcaaggaggcttgcgtcaatgtc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3380 tagatgagaattgtaatattcaatcatcgtattggcatcaaggaggcttgcgtcaatgtc 3439
Query: 230 agttggatctaaaccaaatacctgtaatgcattattcaaatcttcatacccaacaacatc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 agttggatctaaaccaaatacctgtaatgcattattcaaatcttcatacccaacaacatc 3499
Query: 290 ttgttttccacagtaagcaataagctggtaactaccctttgcgtttgttacatattggag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 ttgttttccacagtaagcaataagctggtaactaccctttgcgtttgttacatattggag 3559
Query: 350 agcatcaaaataatggctgatgttttcctgatcaagtgcaatttgagtttcatagttttt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 agcatcaaaataatggctgatgttttcctgatcaagtgcaatttgagtttcatagttttt 3619
Query: 410 aatgatatccttatcgatgtacttaaaagcaacagataggttaataaaatggtaatttat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 aatgatatccttatcgatgtacttaaaagcaacagataggttaataaaatggtaatttat 3679
Query: 470 gtcgtaggggaatggttcaatgtgttggtggttcaaaatattgaaccaccatgtgtgact 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3680 gtcgtaggggaatggttcaatgtgttggtggttcaaaatattgaaccaccatgtgtgact 3739
Query: 530 ggcactaaaatgttgattagaaaagcactttgccactgtcttcttttcagtaccaagttc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 ggcactaaaatgttgattagaaaagcactttgccactgtcttcttttcagtaccaagttc 3799
Query: 590 attttcaagtagcatcgactgcttaccaattaaaacaacctccatggattttctggtata 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 attttcaagtagcatcgactgcttaccaattaaaacaacctccatggattttctggtata 3859
Query: 650 cgcctctctaatccctctgaccttaaaatctgtgatataatcaactaaatctggtggctt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3860 cgcctctctaatccctctgaccttaaaatctgtgatataatcaactaaatctggtggctt 3919
Query: 710 atattcctctccagattggacattatcttctacagcggtcttttgcaaactgaaatcaaa 769
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3920 atattcctctccagattggacattatcttctacagcggtcttctgcaaactgaaatcaaa 3979
Query: 770 cattgtcgtttaccagtcagtattaatttgtgagttgagtgcaacactatcccctggaaa 829
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3980 cattgtcgttaaccagtcagtattaatttgtgagttgagtgcaacactat-ccctggaaa 4038
Query: 830 taatcttaaactcactattaacagatttcctcttgtaatgggttcttaaaatatcatgaa 889
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
Sbjct: 4039 taatcttaaactcactattagcagatttcctc-tgtaatgggttctt-aaatatcatg-a 4095
Query: 890 aaagagatttcaaacacttccgcttggctaagaatttcgtcc 931
|||||| |||||||||| || ||||||||| |||| ||||||
Sbjct: 4096 aaagagttttcaaacac-tcggcttggctaggaatatcgtcc 4136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7406
Number of Sequences: 1807
Number of extensions: 7406
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)