BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG03RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1532 0.0
>3x_Contig1805
Length = 19369
Score = 1532 bits (773), Expect = 0.0
Identities = 893/921 (96%), Gaps = 12/921 (1%)
Strand = Plus / Minus
Query: 50 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 3252
Query: 110 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 3192
Query: 170 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3191 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 3132
Query: 230 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3131 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 3072
Query: 290 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 3012
Query: 350 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 2952
Query: 410 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 2892
Query: 470 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 2832
Query: 530 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 2772
Query: 590 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacag-aaa 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2771 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacagaaaa 2712
Query: 649 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtacctga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtacctga 2652
Query: 709 aaatncaag-aaagtagtaacaacctcatcattccttattccattcgcaatcataccatt 767
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2651 aaatccaagaaaagtagtaacaacctcatcattccttattccattcgcaatcatacca-t 2593
Query: 768 tttgattttc-agaat-anaaatacaaaatggacatgacngnccaagacgaaaaactggt 825
|||||||||| ||||| | |||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2592 tttgattttcaagaataaaaaatacaaaatggacatgacggcccaagacgaaaaactggt 2533
Query: 826 ccacgagggacaagtattacantgntcaatagcacttatttcctttt-ctgctagta-ca 883
|||||||| |||||||| ||| || |||||||||||||||||||||| ||||||||| ||
Sbjct: 2532 ccacgaggaacaagtataacaatgttcaatagcacttatttccttttcctgctagtacca 2473
Query: 884 agtttttacatgaagacaccaga--catgc-ttactttaaggatcgatctttta-ctaac 939
|||| | |||||||||| |||| |||| ||||||||| |||||||||| || |||||
Sbjct: 2472 agttctcacatgaagaccacagaacaatgctttactttaatgatcgatcttctacctaac 2413
Query: 940 atnca-ttttaatggtcgtca 959
|| || |||||||||||||||
Sbjct: 2412 atccatttttaatggtcgtca 2392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5838
Number of Sequences: 1807
Number of extensions: 5838
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)