BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG04FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1367 1029 0.0
>3x_Contig1367
Length = 7312
Score = 1029 bits (519), Expect = 0.0
Identities = 547/554 (98%), Gaps = 2/554 (0%)
Strand = Plus / Minus
Query: 87 ctaagacagactttgaacattgacgagccacaagaagaagaagtagaggaaaaagaagag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 ctaagacagactttgaacattgacgagccacaagaagaagaagtagaggaaaaagaagag 1296
Query: 147 tatgtaatacaggacttattatacttgaagctagaggaagaccaagatcagaaatcctta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 tatgtaatacaggacttattatacttgaagctagaggaagaccaagatcagaaatcctta 1236
Query: 207 gaacaattgggatataagaaactcaatgcagaaggtgtaccagatgcagatttgtcgcag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 gaacaattgggatataagaaactcaatgcagaaggtgtaccagatgcagatttgtcgcag 1176
Query: 267 cttctctcttatcaagactttcaaactatccctggaaatgaattgccggtgattcatgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 cttctctcttatcaagactttcaaactatccctggaaatgaattgccggtgattcatgat 1116
Query: 327 caattaatagatgccattgagactgtattgcttgatttggaaagtttacagaatgaagaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 caattaatagatgccattgagactgtattgcttgatttggaaagtttacagaatgaagaa 1056
Query: 387 caggaactattaaaggataaggccacatatgaggaattgattacaaatttggtaggtcat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 caggaactattaaaggataaggccacatatgaggaattgattacaaatttggtaggtcat 996
Query: 447 actcaaagaatacgaagagaggaaattgcagaataccagagaaagcacaaatccatatct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 995 actcaaagaatacgaagagaggaaattgcagaataccagagaaagcacaaatccaaatct 936
Query: 507 aaaaagaaattttaacgataactatcttcctgatgttatttacttctttgagaaa-gtta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 935 aaaaagaaattttaacgataactatcttcctgatgttatttacttctttgagaaatgtta 876
Query: 566 ggaaatgnatatatctatatctggaatatatatatgtttaactttatcaac-aaagcgtt 624
|||| || ||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct: 875 ggaattgtatatatctatatctgtaatatatatatgtttaactttatcaacgaaggcgtt 816
Query: 625 atcctttaatttag 638
||||||||||||||
Sbjct: 815 atcctttaatttag 802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9273
Number of Sequences: 1807
Number of extensions: 9273
Number of successful extensions: 138
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)