BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG04RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1305 1322 0.0
>3x_Contig1305
Length = 9229
Score = 1322 bits (667), Expect = 0.0
Identities = 772/794 (97%), Gaps = 10/794 (1%)
Strand = Plus / Plus
Query: 59 acagaaatacagcatattgttgctagtaatgacaagcaacgatttcatatcaaaactgat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 acagaaatacagcatattgttgctagtaatgacaagcaacgatttcatatcaaaactgat 2620
Query: 119 ccgaatacagggataatgtacgatctgtgcaacacaaggacatacattgaagcaaattgc 178
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2621 ccgaatacagggataatgtacg-tctgtgcaacacaaggacatacattgaagcaaattgc 2679
Query: 179 tccatcgcaacacgttttaaaaccaattaccaacatagaacaactatcaagtaaattggt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 tccatcgcaacacgttttaaaaccaattaccaacatagaacaactatcaagtaaattggt 2739
Query: 239 tcatggcaccaacgtatcaaactgcatttcaattcttcactcaggtttcatcaaaaaaat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 tcatggcaccaacgtatcaaactgcatttcaattcttcactcaggtttcatcaaaaaaat 2799
Query: 299 gtcacggaaccatgttcatttgtctcccggcattactggaaaagatacggatgtcatcag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 gtcacggaaccatgttcatttgtctcccggcattactggaaaagatacggatgtcatcag 2859
Query: 359 tggaatgagaagttctagtaacgtttacatccatatcaaaaggatccaggaaatgctaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 tggaatgagaagttctagtaacgtttacatccatatcaaaaggatccaggaaatgctaga 2919
Query: 419 cagcctcaaccttgtgaaatcattaaataatgtttacctaacttctcaggacataccgtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 cagcctcaaccttgtgaaatcattaaataatgtttacctaacttctcaggacataccgtt 2979
Query: 479 gaaatttattgatttcatccaagtacggaaaggcagatctgcagcatctagtgaacaact 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 gaaatttattgatttcatccaagtacggaaaggcagatctgcagcatctagtgaacaact 3039
Query: 539 tcaacagctaaaaaagttggctacagagatgaaagttccaatcgagattatctgaaacga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 tcaacagctaaaaaagttggctacagagatgaaagttccaatcgagattatctgaaacga 3099
Query: 599 cttgatcgctntatctatacatatatatatcacctcttaaataaataa-tgacttgtttt 657
|||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct: 3100 cttgatcgctttatctatacatatatatatcacctctt-aataattaattgacttgtttt 3158
Query: 658 agactttccacttgac-acatcaatttttagacgaagcatatcgctgtatgtactcgccg 716
||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3159 agactttccac-tgacaacatcaatttttagacgaggcatatcgctgtatgtactcgccg 3217
Query: 717 nttgta-taagttcatatcaaaacgttagacccacccgaatggtgtaattccttctgtca 775
||||| ||||||||||||||||||| ||| || ||||||| ||| |||||||||||||
Sbjct: 3218 -ttgtattaagttcatatcaaaacgtcagaacccaccgaatgttgt-attccttctgtca 3275
Query: 776 tcataagaaatttagatcacctgtggtttttatcattttgaaacccttgaaaatttttga 835
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct: 3276 tcataagaaatttagatcacgtgt-gtttttatcattttgaacgccttgaaaatttttg- 3333
Query: 836 atctttcattaaac 849
||||||||| ||||
Sbjct: 3334 atctttcataaaac 3347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7868
Number of Sequences: 1807
Number of extensions: 7868
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)