BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG05FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig952 1063 0.0
>3x_Contig952
Length = 3817
Score = 1063 bits (536), Expect = 0.0
Identities = 567/576 (98%), Gaps = 2/576 (0%)
Strand = Plus / Minus
Query: 90 tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 1266
Query: 150 ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 1206
Query: 210 ctcgttttttccttcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 269
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 ctcgttttttccctcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 1146
Query: 270 acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 1086
Query: 330 gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 1026
Query: 390 aattcacaagagtgtctaagtgttctccctagcggttgtaaaaagtcctcatttaaccga 449
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1025 aattcacaagagtgtctaagtgttct-cctagcggttgtaaaaagtcctcatttaaccga 967
Query: 450 tatttagcatgtacattntgatcgaatttattcaacctaacagaaaggtccaactttgtt 509
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tatttagcatgtacattttgatcgaatttattcaacctaacagaaaggtccaactttgtt 907
Query: 510 aangcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagn 569
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aaggcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagt 847
Query: 570 gatcttgnatctacattctgattgctgttatatggtgcccttgcatttccatttcggatt 629
||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 846 gatcttgtatctacattctgattgctgttatatggtg-ccttgcatttccattccggatt 788
Query: 630 attccagggccggatgtattctttgactaaaattgc 665
||||||||||||||||||| ||||||||||||||||
Sbjct: 787 attccagggccggatgtatcctttgactaaaattgc 752
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7537
Number of Sequences: 1807
Number of extensions: 7537
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)