BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG05RM1.SCF screened BAC_end
(810 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 696 0.0
>3x_Contig1738
Length = 21411
Score = 696 bits (351), Expect = 0.0
Identities = 418/437 (95%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 48 agcagcacctttgaaaggagcaaaagaaaccaactcaactaacttagtgaaagagccgaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7441 agcagcacctttgaaaggagcaaaagaaaccaactcaactaacttagtgaaagagccgaa 7500
Query: 108 atcattgatctgttgctggacttccttcaaacgagatccgatatcatcctgttgcaattt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7501 atcattgatctgttgctggacttccttcaaacgagatccgatatcatcctgttgcaattt 7560
Query: 168 cactttgaagataccatacccggtaggttcttcgaacaaaagatattcaataggagccat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 cactttgaagataccatacccggtaggttcttcgaacaaaagatattcaataggagccat 7620
Query: 228 tatttaattctctgatcaataaagtttcctcgctaccgtaaaatctctttgatctggact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 tatttaattctctgatcaataaagtttcctcgctaccgtaaaatctctttgatctggact 7680
Query: 288 cttcaacacacactaacttcggaatgaatgaacaaaactcnagaatatacangacagtat 347
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 7681 cttcaacacacactaacttcggaatgaatgaacaaaactcaagataatacagacaagtat 7740
Query: 348 taaattgaatatcgctgtgcacatttacac-atataccatatattcactggtcagaaagc 406
||| | |||||||||||||||| | |||| |||||| ||||||||||||||||||||||
Sbjct: 7741 taattgaaatatcgctgtgcaca-taacacaatatacaatatattcactggtcagaaagc 7799
Query: 407 tcatctctctttattggcttcgaaatgaaaattttccaaac-aaaaaaaaagagccatga 465
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 7800 tcatctctctttattggcttcgaaatgaaaattttccaaacaaaaaaaaaagagcgatga 7859
Query: 466 actttaaaaaaaaaagc 482
||| ||||| ||||||
Sbjct: 7860 gcttgaaaaagaaaagc 7876
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,232
Number of Sequences: 1807
Number of extensions: 38232
Number of successful extensions: 5262
Number of sequences better than 1.0e-20: 1
length of query: 810
length of database: 10,358,551
effective HSP length: 16
effective length of query: 794
effective length of database: 10,329,639
effective search space: 8201733366
effective search space used: 8201733366
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)