BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG06FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1045 0.0
>3x_Contig1515
Length = 8855
Score = 1045 bits (527), Expect = 0.0
Identities = 584/597 (97%), Gaps = 6/597 (1%)
Strand = Plus / Minus
Query: 86 caagagggaattatgtcagaagatatcccacaatgggcgaaagatttgaaagttgacaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 caagagggaattatgtcagaagatatcccacaatgggcgaaagatttgaaagttgacaaa 3741
Query: 146 gtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtttggaataaagaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 gtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtttggaataaagaaa 3681
Query: 206 ctagagatcgaaggacagaagccccctaaggtgatagatcatgacgctcaaaatcgtata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3680 ctagagatcgaaggacagaagccccctaaggtgatagatcatgacgctcaaaatcgtata 3621
Query: 266 gccaaactcactgcagaacgggcatggcagatatcttctgagcctctcaaatctgttccc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 gccaaactcactgcagaacgggcatggcagatatcttctgagcctctcaaatctgttccc 3561
Query: 326 atgaatataattatgtcatatatgtctggtaacagcttgcaaattattcctataatgact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 atgaatataattatgtcatatatgtctggtaacagcttgcaaattattcctataatgact 3501
Query: 386 gctgtgatgttggtctcaaatcccatcaaaagtatcttaggagttaagtcaaaatttcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 gctgtgatgttggtctcaaatcccatcaaaagtatcttaggagttaagtcaaaatttcaa 3441
Query: 446 catttaatcaacaaagataatgatgtaaccccgcctgtagttgcagccatgattatgtac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 catttaatcaacaaagataatgatgtaaccccgcctgtagttgcagccatgattatgtac 3381
Query: 506 gtgatataccaattaatcctcatgggaataggtttgcataagttgaaatttcatgggatt 565
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 3380 gtgatataccaattaatcctcatgggaataggtttgcataagttg-aattcaatgggatt 3322
Query: 566 gttcccaactacgtcaagtgaatgggcttgcttggncacaaccaacggagtattttatac 625
|||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||
Sbjct: 3321 gttcccaactacgtcaagtg-attggcttgcttggcaacaaccaacggagta-tttata- 3265
Query: 626 ccgtacgttaagtattttatttngaatgtagcgaatttaatacattatacaaaaggg 682
||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||
Sbjct: 3264 ccgtacgttaagtatttaatt--gaatgtagcgaaattaatacattatacaaaaggg 3210
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9434
Number of Sequences: 1807
Number of extensions: 9434
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)