BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZG06RM1.SCF screened BAC_end (949 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1803 1259 0.0 >3x_Contig1803 Length = 52241 Score = 1259 bits (635), Expect = 0.0 Identities = 794/828 (95%), Gaps = 16/828 (1%) Strand = Plus / Minus Query: 49 ttgctgcgaagaaaactctactggatctaaagaaccttccgaagtgctcttggttgattt 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14829 ttgctgcgaagaaaactctactggatctaaagaaccttccgaagtgctcttggttgattt 14770 Query: 109 ttttcgttctttacgttctttacgagattttaggtgttttgagagctcgaatagcattgc 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14769 ttttcgttctttacgttctttacgagattttaggtgttttgagagctcgaatagcattgc 14710 Query: 169 gaatgggttcttcgggtcaccaaacccacatagttgtagaatgtgcgattgagaaaatag 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14709 gaatgggttcttcgggtcaccaaacccacatagttgtagaatgtgcgattgagaaaatag 14650 Query: 229 tgaggaatgtctaaagaaatgttttaatctttctgcatcctgaatgaaaatcaaatttgg 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14649 tgaggaatgtctaaagaaatgttttaatctttctgcatcctgaatgaaaatcaaatttgg 14590 Query: 289 atcaaagaagttcccagaagaggaaacaccaaatttgtgttgaaagtaatgtatgacgac 348 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 14589 atcaaagaagttcccagaagaggagacaccaaatttgtgttgaaagtaatgtatgacgac 14530 Query: 349 attttgtaattctgatgattccagaaagcttggaagtaacatcacttctgtgtgctttaa 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14529 attttgtaattctgatgattccagaaagcttggaagtaacatcacttctgtgtgctttaa 14470 Query: 409 gtagtcaacaatgtgatttgtcctgtttccactgctgtcacgttcagcaaaagctctttg 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14469 gtagtcaacaatgtgatttgtcctgtttccactgctgtcacgttcagcaaaagctctttg 14410 Query: 469 gtagatgttatctatgactaattgcatatactgcggngaaggaacananatgtcttcaca 528 |||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| Sbjct: 14409 gtagatgttatctatgactaattgcatatactgcggggaaggaacaaaaatgtcttcaca 14350 Query: 529 gaaaacagattttcccanattgacaaatgcttcncaagtgttttgttgaactgttganca 588 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || Sbjct: 14349 gaaaacagattttcccaaattgacaaatgcttccaaagtgttttgttgaactgttga-ca 14291 Query: 589 tatgat-atatagctttccatggcc-aaagtgattttcaggc-ttctctgta-caatgct 644 |||||| ||||||||| |||||||| ||||||| |||||||| ||||||||| ||||||| Sbjct: 14290 tatgataatatagcttcccatggccaaaagtgaatttcaggctttctctgtaccaatgct 14231 Query: 645 cagcacttagtttccaatc-acgaatcc-gnaggatat-gagcgattg-cattctggata 700 ||||||| ||||||||||| |||||||| | ||||||| ||||||||| ||||||||||| Sbjct: 14230 cagcactaagtttccaatcaacgaatccggaaggatatagagcgattgccattctggata 14171 Query: 701 aatcacc-agcc-ttctag-caggggatggagtactttgggggt-aattctncaacatat 756 ||||||| |||| |||||| |||||||||||||||||||||||| ||| || |||||||| Sbjct: 14170 aatcaccaagcctttctagccaggggatggagtactttgggggtaaatcctccaacatat 14111 Query: 757 ttgatattgc-ataaatacgtatgcgatgaattgacagcaaacctcgggatccatgaaat 815 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14110 ttgataatgcaataaatacgtatgcgatgaattgacagcaaacctcgggatccatgaaat 14051 Query: 816 ttg-aaaatttttc-aaacattcaaaaatgtaattgttacataaaccc 861 ||| |||||| ||| |||||| ||||||||||||||| ||||||||| Sbjct: 14050 ttgaaaaattcttcaaaacatccaaaaatgtaattgtaccataaaccc 14003 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7091 Number of Sequences: 1807 Number of extensions: 7091 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 949 length of database: 10,358,551 effective HSP length: 16 effective length of query: 933 effective length of database: 10,329,639 effective search space: 9637553187 effective search space used: 9637553187 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)