BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG08FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig395 1027 0.0
>3x_Contig395
Length = 1929
Score = 1027 bits (518), Expect = 0.0
Identities = 589/603 (97%), Gaps = 9/603 (1%)
Strand = Plus / Plus
Query: 87 tggtagctttcaaacttccttctaatttccctttgcaaaatgttcaagtacatggtgttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggtagctttcaaacttccttctaatttccctttgcaaaatgttcaagtacatggtgttt 622
Query: 147 ccagggttggtataactgagcaacaatggaaatcgtggataatatctacccagagaatca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccagggttggtataactgagcaacaatggaaatcgtggataatatctacccagagaatca 682
Query: 207 tcagtaacatgaatggtagtgtagtggattctttggaactcttgtcaaagaacgttaagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcagtaacatgaatggtagtgtagtggattctttggaactcttgtcaaagaacgttaagt 742
Query: 267 tacaattcagcggctttgaggaatgtgccatttgctactatgttttgcatgctattgaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tacaattcagcggctttgaggaatgtgccatttgctactatgttttgcatgctattgaca 802
Query: 327 gaaaattgcctacgaaggtttgcccaacatgtaataataggttccatggggcatgtcttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaaaattgcctacgaaggtttgcccaacatgtaataataggttccatggggcatgtcttt 862
Query: 387 acaagtggttcaaatcttcagggaacaacacatgtcccttatgtcgtggtgaattcaatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 acaagtggttcaaatcttcagggaacaacacatgtcccttatgtcgtggtgaattcaatc 922
Query: 447 taagaaagtgaagatcctacaagtgcacaaaatatagatattcgctctgttatctataaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 taagaaagtgaagatcctacaagtgcacaaaatatagatattcgctctgttatctataaa 982
Query: 507 caatctttgttaacatatttaacatgaataaacatgtgtaagtatgtgtttcttgattcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 caatctttgttaacatatttaacatgaataaacatgtgtaagtatgtgtttcttgattcc 1042
Query: 567 agtgagtttatatatattacatatatatatatgacccggnatatcagaacgcgtcatttg 626
||||||| |||||||| ||||||||||||||||| |||| ||||||| |||||||| |||
Sbjct: 1043 agtgagtatatatata-tacatatatatatatga-ccgggatatcag-acgcgtca-ttg 1098
Query: 627 cactttaagacgttgnataaaattattatattggaattccttttggttaaagtctttctg 686
||| ||||||||||| || ||||||||||| ||| |||| ||| |||||||||||||||
Sbjct: 1099 cac-ttaagacgttgtat-aaattattata-tggtattc--ttttgttaaagtctttctg 1153
Query: 687 ttt 689
|||
Sbjct: 1154 ttt 1156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,967
Number of Sequences: 1807
Number of extensions: 11967
Number of successful extensions: 153
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)