BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZG08RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig361                                                          396   e-110

>3x_Contig361 
          Length = 1383

 Score =  396 bits (200), Expect = e-110
 Identities = 308/339 (90%), Gaps = 5/339 (1%)
 Strand = Plus / Minus

                                                                        
Query: 427  caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 1311

                                                                        
Query: 487  gcttcataaaacgcgacagcctcggaagagtaatttgaaagatcccgttcactcttagca 546
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 gcttcataaaacgcgaca-cctcggaagagtaatttgaaagatcccgttcactcttagca 1252

                                                                        
Query: 547  ctgctaggcgggttattcactttgggtatgctgacttgctgcgccngtgggtgttgtcgt 606
            |||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||
Sbjct: 1251 ctgctaggcgggttatccactttgggtatgctgacttgctgcgccggtggtggttgtcgt 1192

                                                                        
Query: 607  gatactggcgtcgttaccgntgactgggagacttgnnctgnatctttctcataca-ttgg 665
            ||||||||||||||||||| ||||||||||  |||   || |||||||||||||| ||||
Sbjct: 1191 gatactggcgtcgttaccgttgactgggagctttgtcttgtatctttctcatacatttgg 1132

                                                                        
Query: 666  taataaatattccgatctgcaacatgattcttgggccaaatcatcaaccgaatttgggga 725
            ||   |||||||  |||||||||||||||| |||| || ||||||||||| || ||| | 
Sbjct: 1131 tatggaatattcgtatctgcaacatgattc-tggggcagatcatcaaccggatatggtgt 1073

                                                   
Query: 726  atttcttactgggttcgggaactggccgggtacatgttt 764
            | |||||||| || ||| || |||| |||||||||||||
Sbjct: 1072 a-ttcttacttggctcgtgacctgg-cgggtacatgttt 1036


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5483
Number of Sequences: 1807
Number of extensions: 5483
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)