BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZG08RM1.SCF screened BAC_end (934 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig361 396 e-110 >3x_Contig361 Length = 1383 Score = 396 bits (200), Expect = e-110 Identities = 308/339 (90%), Gaps = 5/339 (1%) Strand = Plus / Minus Query: 427 caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1370 caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 1311 Query: 487 gcttcataaaacgcgacagcctcggaagagtaatttgaaagatcccgttcactcttagca 546 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1310 gcttcataaaacgcgaca-cctcggaagagtaatttgaaagatcccgttcactcttagca 1252 Query: 547 ctgctaggcgggttattcactttgggtatgctgacttgctgcgccngtgggtgttgtcgt 606 |||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| Sbjct: 1251 ctgctaggcgggttatccactttgggtatgctgacttgctgcgccggtggtggttgtcgt 1192 Query: 607 gatactggcgtcgttaccgntgactgggagacttgnnctgnatctttctcataca-ttgg 665 ||||||||||||||||||| |||||||||| ||| || |||||||||||||| |||| Sbjct: 1191 gatactggcgtcgttaccgttgactgggagctttgtcttgtatctttctcatacatttgg 1132 Query: 666 taataaatattccgatctgcaacatgattcttgggccaaatcatcaaccgaatttgggga 725 || ||||||| |||||||||||||||| |||| || ||||||||||| || ||| | Sbjct: 1131 tatggaatattcgtatctgcaacatgattc-tggggcagatcatcaaccggatatggtgt 1073 Query: 726 atttcttactgggttcgggaactggccgggtacatgttt 764 | |||||||| || ||| || |||| ||||||||||||| Sbjct: 1072 a-ttcttacttggctcgtgacctgg-cgggtacatgttt 1036 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5483 Number of Sequences: 1807 Number of extensions: 5483 Number of successful extensions: 40 Number of sequences better than 1.0e-20: 1 length of query: 934 length of database: 10,358,551 effective HSP length: 16 effective length of query: 918 effective length of database: 10,329,639 effective search space: 9482608602 effective search space used: 9482608602 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)