BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG09RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1558 1509 0.0
>3x_Contig1558
Length = 12860
Score = 1509 bits (761), Expect = 0.0
Identities = 867/889 (97%), Gaps = 11/889 (1%)
Strand = Plus / Plus
Query: 48 aaattgttcctcatcaattgagggcccaggtactcagtaatggaagcatttttttcgaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8317 aaattgttcctcatcaattgagggcccaggtactcagtaatggaagcatttttttcgaat 8376
Query: 108 gtcccaggtgtttattgacatatttcttcccagacggaagttacatgacaaacttcactc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8377 gtcccaggtgtttattgacatatttcttcccagacggaagttacatgacaaacttcactc 8436
Query: 168 atttcaaaggtgtttttgatataaatctaaagatagagtggttaggtatgttcacgtatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8437 atttcaaaggtgtttttgatataaatctaaagatagagtggttaggtatgttcacgtatg 8496
Query: 228 gttttgttcccggtgttgaatggggttctttggaaactaagttaagtgaccctacagtca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8497 gttttgttcccggtgttgaatggggttctttggaaactaagttaagtgaccctacagtca 8556
Query: 288 gtgcggaaatatttggcaaactatcaacgatcaatggcaagaagaagagcgctaatgaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8557 gtgcggaaatatttggcaaactatcaacgatcaatggcaagaagaagagcgctaatgaca 8616
Query: 348 gtaaaaataatacaggtaaatctggcattgattcgaaaaaggataaacctattaaacaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8617 gtaaaaataatacaggtaaatctggcattgattcgaaaaaggataaacctattaaacaag 8676
Query: 408 aattcgacgaagcagatcttgatgctgtacggtttgaagcaatgacaaaattgaggtcgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8677 aattcgacgaagcagatcttgatgctgtacggtttgaagcaatgacaaaattgaggtcgc 8736
Query: 468 aattcaaagttttccaaaacgtttcaagttttggcatacaagagggattcatgcgaattc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8737 aattcaaagttttccaaaacgtttcaagttttggcatacaagagggattcatgcgaattc 8796
Query: 528 tgcaggtgaatgacgttatgtcatatttgaaaaacttaagaatctatcaaaaatgcagtg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8797 tgcaggtgaatgacgttatgtcatatttgaaaaacttaagaatctatcaaaaatgcagtg 8856
Query: 588 gtatcaaaagtcctgtagagacattatcaacttttgttaatcangaaagagcagcaccga 647
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8857 gtatcaaaagtcctgtagagacattatcaacttttgttaatcaggaaagagcagcaccga 8916
Query: 648 gtgctaatttgggcccaactgttncctacacanatgctgagttttctcatgaacagtctt 707
||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 8917 gtgctaatttgggcccaactgttcctaacacaaatgctgagttttctcatgaacagtctt 8976
Query: 708 cgaaggcgc-acccacatctactgggtttgcttctagcggatcgagcggntc-accaata 765
||||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 8977 cgaaggcgcaacccacatctactggttttgcttctagcggatcgagcggttcaaccaata 9036
Query: 766 ccgct-aaagacgcagagtc-gttcagc-ctatcgccattgagcagctctgaaagaa-ca 821
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct: 9037 ccgctaaaagacgcagagtcagttcagcactatcgccattgagcagctctgaaagaagca 9096
Query: 822 gcctccatgaaaagaatgttgc-aatctcaagaaagcc-aatactgaacttctatttc-a 878
||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||| || |
Sbjct: 9097 gcctcgatgaaaagaatggtgcaaatctcaagaaagccaaatactgaacttctatatcaa 9156
Query: 879 tatggttccttttgattccatttcatttctctatttac-ttatggacaa 926
||| ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9157 tat-gtttcttttgattccatttcatttctctatttacattatggacaa 9204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7275
Number of Sequences: 1807
Number of extensions: 7275
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)