BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG10RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1086 0.0
>3x_Contig1338
Length = 8134
Score = 1086 bits (548), Expect = 0.0
Identities = 608/623 (97%), Gaps = 4/623 (0%)
Strand = Plus / Minus
Query: 48 taaattgtatgtaatagagattgatacttatacagtttcaacatgcttagatgttagatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5315 taaattgtatgtaatagagattgatacttatacagtttcaacatgcttagatgttagatg 5256
Query: 108 ggtacaagaagattctgacagaagcaccgaaagtcttagctggcaagttagatctgaatg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5255 ggtacaagaagattctgacagaagcaccgaaagtcttagctggcaagttagatctgaatg 5196
Query: 168 tagctctaacgacaccggagttaccgtgtgttctgttgatcttaccccagataactctga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5195 tagctctaacgacaccggagttaccgtgtgttctgttgatcttaccccagataactctga 5136
Query: 228 tcttggaacctctgacttccttggagcatctgtagacataggcgactctcttacccaagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5135 tcttggaacctctgacttccttggagcatctgtagacataggcgactctcttacccaagt 5076
Query: 288 agaacttagcgtcttctgggttggcaacaccttcaatcttgaccaaagagacgtttgggt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5075 agaacttagcgtcttctgggttggcaacaccttcaatcttgaccaaagagacgtttgggt 5016
Query: 348 tgttaacgctcttggatctttggtatgacaaatgcttacctttgacgtacactgtaaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5015 tgttaacgctcttggatctttggtatgacaaatgcttacctttgacgtacactgtaaaaa 4956
Query: 408 ttaaaccacgtagggatgaaaaaggttagtaagggtgagtttttaattggaggtccagat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4955 ttaaaccacgtagggatgaaaaaggttagtaagggtgagtttttaattggaggtccagat 4896
Query: 468 agtacaggtaatgctgccacgagtgaataaaataatattcatccatgaaaacagaacctc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4895 agtacaggtaatgctgccacgagtgaataaaataatattcatccatgaaaacagaacctc 4836
Query: 528 atatgattgtcattataatgaagagtattcccccattagaaggaaatgaaacatggaatt 587
||||||||||||| ||||||||||||| | ||||||||||||| |||| |||||||| ||
Sbjct: 4835 atatgattgtcataataatgaagagta-taccccattagaagggaatg-aacatggattt 4778
Query: 588 ngtatgtctgtccctgcctaatatcagtactaaatttttacgtactaaatacttcccgtc 647
||||||||| |||| ||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct: 4777 gttatgtctgt-cctggctaatatcagtactaaattttcacgtactaagtactt-ccgtc 4720
Query: 648 gaattcccaaaaaggttgataga 670
| ||||| |||||||||||||||
Sbjct: 4719 gtattccgaaaaaggttgataga 4697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8031
Number of Sequences: 1807
Number of extensions: 8031
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)