BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG11FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 839 0.0
>3x_Contig1743
Length = 20172
Score = 839 bits (423), Expect = 0.0
Identities = 557/589 (94%), Gaps = 10/589 (1%)
Strand = Plus / Minus
Query: 87 tgaaaccatctgaaatattttgagtcatagatctagacactatgtacgcatctgcaccta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19449 tgaaaccatctgaaatattttgagtcatagatctagacactatgtacgcatctgcaccta 19390
Query: 147 atctggataacaagtcaccaaccttgtttctgtcataaaattccatatcatgatgcatag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19389 atctggataacaagtcaccaaccttgtttctgtcataaaattccatatcatgatgcatag 19330
Query: 207 tcttcttgataacgtttgatcttaatctggccacaagtctttcccctaatatcttaagga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19329 tcttcttgataacgtttgatcttaatctggccacaagtctttcccctaatatcttaagga 19270
Query: 267 gtactactcttcc-aaattagccatggttcctatcaac-agggcccaccgaataaaagg- 323
||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 19269 gtactactcttccaaaattagccatggttcctatcaacaaggccccaccgaataaaagga 19210
Query: 324 aaaagtcatatagctgtatgtctcccacaaattggggaaagatcattcaaagtaagactt 383
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct: 19209 aaaagtcatatagctgtatgtctcccac-aattgggggaagatcatccaaagtaagactt 19151
Query: 384 ttcgaatcttccaacccttcattgccgnntatggtattactgccgcttaatgcattcttg 443
|||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct: 19150 ttcgaatcttccaaccctccattgccgttattggtattactgccgcttagtgcattcttg 19091
Query: 444 gtagcatctaatactaacccgatcacctttcgtactgccataccaatggtacaggagacg 503
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 19090 gtagcatctaatactaacccgatcaccttcggtactgccataccaatggtacaggagacg 19031
Query: 504 gtcaataatgacaccgccaatactagcatttttcaatcatgcccttgccagtaaaaacaa 563
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 19030 gtcaataatgacaccgccaatactagcattttccaatcatg-ccttgccaagtaaaacaa 18972
Query: 564 ccgtttaacattagctagccccaccagaaactgtagatgaccgttttgttggtcttttta 623
||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 18971 ccgtttaacatcagctag-cccaccagaaactgtagatga-cggtttgttggtcttttta 18914
Query: 624 ttacggagttttggccttaaccttcctgaaggctaaccatttcccccta 672
| | ||||||||| || | ||||||||| | ||| ||||||||||||||
Sbjct: 18913 tca-ggagttttgtcc-tcaccttcctg-atgcttaccatttcccccta 18868
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6466
Number of Sequences: 1807
Number of extensions: 6466
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)