BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG11RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig919 920 0.0
>3x_Contig919
Length = 4576
Score = 920 bits (464), Expect = 0.0
Identities = 486/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Plus
Query: 50 tttacttaatgcatcattgatattgacgaattgtgctgcatatttactgttttttgactc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttacttaatgcatcattgatattgacgaattgtgctgcatatttactgttttttgactc 570
Query: 110 gactttgaaagcggaaccagcactcaagtacctttcaccagagcatggataaaaggcctg 169
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 571 gactttgaaagcggaaccagcactcaagtacctttaaaaagagcatggataaaaggcctg 630
Query: 170 aacaaaggtcaaattgaagatgtaagtgatcagaatgataagtctgaatacgcctgatcg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aacaaaggtcaaattgaagatgtaagtgatcagaatgataagtctgaatacgcctgatcg 690
Query: 230 tatgccatttttaaagaacatgatctcaaacaagagacagaggagaaaatatgcgtagga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tatgccatttttaaagaacatgatctcaaacaagagacagaggagaaaatatgcgtagga 750
Query: 290 gaaagcaaaaaaaaacagcaccaatataat-aaaaacaaaggactcaattgaaccagaat 348
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 751 gaaagcaaaaaaaaacagcaccaatataataaaaaacaaaggactcaattgaaccagaag 810
Query: 349 ctatcaagcaagaagcaaagaaaagttatcactttctttggaatcaattaaacttgaatt 408
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctagcaagcaagaagcaaagaaaagttatcactttctttggaatcaattaaacttgaatt 870
Query: 409 attaaaaagagaattcaaatgaattggaagcagcggaaggcagataaagatggattatgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 attaaaaagagaattcaaatgaattggaagcagcggaaggcagataaagatggattatgc 930
Query: 469 aaaagaaaatttcctgatcactctaccagaccaaaatatcaaaacagcagaatatctaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aaaagaaaatttcctgatcactctaccagaccaaaatatcaaaacagcagaatatctaga 990
Query: 529 aaaaaggtgagc 540
||||||||||||
Sbjct: 991 aaaaaggtgagc 1002
Score = 363 bits (183), Expect = e-100
Identities = 284/307 (92%), Gaps = 9/307 (2%)
Strand = Plus / Plus
Query: 632 tatatatattgatgtatctaaattagcg-ttttacagatctttttttctttaaaggacga 690
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1094 tatatatattgatgtatctaaat-agcggttttacagatctttttttctttaaaggacga 1152
Query: 691 aaatctcaggtttagtatcattacccaaagaaagtatgaaaatacctgaatgaggtttac 750
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1153 aaatctcaggtttagtatcattacccaaagaagtaatgaaaatacctgaatgaggtttac 1212
Query: 751 gtgaatttaagaataagctggaccc-anagacagac-aatgacgctttgaaggg-ccaaa 807
||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||
Sbjct: 1213 gtgaatttaagaataagctggacccaaaagacagacaaatgacgctttgaagggcccaaa 1272
Query: 808 tatacagttgtgggataaat-atgagacgaggtctcactcgnttnctttgtcgtaataca 866
|||||||||||||||||||| |||||||||||||||||||| || ||| |||||||| ||
Sbjct: 1273 tatacagttgtgggataaatcatgagacgaggtctcactcggtttcttggtcgtaatcca 1332
Query: 867 gnctgaattgtgttatccctgctc-acacaaaaac-atgacatgggtgggtacccgtcca 924
| |||| |||||||||||||||| ||||| |||| |||||||||||| ||| |||||||
Sbjct: 1333 gcctgatgtgtgttatccctgctcaacacagaaacaatgacatgggtgagta-ccgtcca 1391
Query: 925 atccatt 931
||||||
Sbjct: 1392 gtccatt 1398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8572
Number of Sequences: 1807
Number of extensions: 8572
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)