BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZG12FM1.SCF screened BAC_end
         (991 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1016                                                         959   0.0  

>3x_Contig1016 
          Length = 4444

 Score =  959 bits (484), Expect = 0.0
 Identities = 560/579 (96%), Gaps = 5/579 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   atagatataggtatgatcagcaacagcggtatcgtagcatcctcacacgatttaggttcg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2635 atagatataggtatgatcagcaacagcggtatcgtagcatcctcacacgatttaggttcg 2576

                                                                        
Query: 146  agctatgtgcaagatcaaagagaaattttacatgacgtacccttaacggtacttcccagt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2575 agctatgtgcaagatcaaagagaaattttacatgacgtacccttaacggtacttcccagt 2516

                                                                        
Query: 206  tcgaaaataaaacaggacacaaggaaggcgattcaagaatttcacaaaaagtacttcgct 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 tcgaaaataaaacaggacacaaggaaggcgattcaagaatttcacaaaaagtacttcgct 2456

                                                                        
Query: 266  aacctagtgaaaaaccttaccgtggaatataacaagccattggtcgccaatatcgaatcg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 aacctagtgaaaaaccttaccgtggaatataacaagccattggtcgccaatatcgaatcg 2396

                                                                        
Query: 326  tgacgcaataggtttctgcactattagcgcactcaaaatgggttcaccanatgttgaaat 385
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2395 tgacgcaataggtttctgcactattagcgcactcaaaatgggttcaccaaatgttgaaat 2336

                                                                        
Query: 386  gcgatatatcactatatacgtctgaacatttctcaatctttgtaaggtactttcactctc 445
            ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 2335 gcgatatatcactatatacgtctgaacatttctcaatcttgtaaaggtactttcactctc 2276

                                                                        
Query: 446  tttattgaaaacattgaaatatacaaacttttgttg-atagacatattaaacaattcgca 504
            |||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||
Sbjct: 2275 tttattgaaaacattgaaatatacaaac-tttgtagaatagacatataaaacaatacgca 2217

                                                                        
Query: 505  gtatacgattttgttttgtcaaaggagccaattaagtacggtttgagtaagtgcccttga 564
            ||||||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct: 2216 gtatacgattttggtttgtcaaaggagccaattaggtacggttagagtaagtg-ccttga 2158

                                                                        
Query: 565  ctgctgcatatatactgaaaatttgttcatttaaaaagccaaggaggcgaggaagcaaaa 624
            ||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 2157 ctgctgcatatatactg-aaatttgttcatttaagaagccaaggaagcgaggaggcaaaa 2099

                                                   
Query: 625  aaaaaagcctaaacaaactggaaagcgcccaaatactat 663
            |||||||| |||||||||||||||||| |||||||||||
Sbjct: 2098 aaaaaagcataaacaaactggaaagcg-ccaaatactat 2061


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8488
Number of Sequences: 1807
Number of extensions: 8488
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)