BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZG12RM1.SCF screened BAC_end
(810 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 628 e-180
>3x_Contig1654
Length = 17174
Score = 628 bits (317), Expect = e-180
Identities = 344/349 (98%), Gaps = 3/349 (0%)
Strand = Plus / Plus
Query: 48 cgaagcggcagcgatttggatgaaggaatacggaatttaagcctattagatacggatgac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295 cgaagcggcagcgatttggatgaaggaatacggaatttaagcctattagatacggatgac 6354
Query: 108 aatctgaaatttgagttagagtccggcaaaaaagagagacaacaagagtatgatggtagt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6355 aatctgaaatttgagttagagtccggcaaaaaagagagacaacaagagtatgatggtagt 6414
Query: 168 tgcaaccaaattgctattgatactagcaaagatgattatgtgaataaatattattgtaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6415 tgcaaccaaattgctattgatactagcaaagatgattatgtgaataaatattattgtaat 6474
Query: 228 gtgccgaggcggatcaattctgcggtgagcgaggaggacgaagaagaaactacgactgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6475 gtgccgaggcggatcaattctgcggtgagcgaggaggacgaagaagaaactacgactgat 6534
Query: 288 aatactacctcagagactgatacggtgatcagtagtggagatattttccaattgataagc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6535 aatactacctcagagactgatacggtgatcagtagtggagatattttccaattgataagc 6594
Query: 348 agcgaatatcggtggatt-aggaagataggta-ggttcctgctgtaatt 394
||||| ||||||||||| |||||||| |||| ||||||||||||||||
Sbjct: 6595 agcgataatcggtggattaaggaagat-ggtagggttcctgctgtaatt 6642
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,397
Number of Sequences: 1807
Number of extensions: 43397
Number of successful extensions: 9940
Number of sequences better than 1.0e-20: 1
length of query: 810
length of database: 10,358,551
effective HSP length: 16
effective length of query: 794
effective length of database: 10,329,639
effective search space: 8201733366
effective search space used: 8201733366
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)