BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH01FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 781 0.0
>3x_Contig1681
Length = 11798
Score = 781 bits (394), Expect = 0.0
Identities = 434/445 (97%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 86 tacatgtgaagagaattactttacgtcttgttggtaagtttaagcttgagtttttacaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8660 tacatgtgaagagaattactttacgtcttgttggtaagtttaagcttgagtttttacaag 8719
Query: 146 tgggtcagcataagaataataatttggctagtatagtcaaagaggaccaaaccatctttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8720 tgggtcagcataagaataataatttggctagtatagtcaaagaggaccaaaccatctttg 8779
Query: 206 aagctttctggcataacttgttggttgacaaagagggtgtagtattgaagggctccgatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8780 aagctttctggcataacttgttggttgacaaagagggtgtagtattgaagggctccgatg 8839
Query: 266 cttccggtgctggtactgggagtagtagttctggttctggaaatagtagttcctcttctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8840 cttccggtgctggtactgggagtagtagttctggttctggaaatagtagttcctcttctt 8899
Query: 326 ccttatcttcaaaaccaattctttctagggtttcgatctgtacccataatgaacaatcca 385
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8900 ccttatcttcaaaaccaattctttctaggg-ttcgatctgtacccataatgaacaatcca 8958
Query: 386 gcaaaaatgaaattgagcaagacaagctctccgacggtacttaaattacctagtaacgga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8959 gcaaaaatgaaattgagcaagacaagctctccgacggtacttaaattacctagtaacgga 9018
Query: 446 gttagtggtacaactttatatggaaccaatgcgccaactggagccagttttatgttaccc 505
|||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 9019 gttagtggtacaccttataatggaacgaatgcgccaactggagccagtttcatgttacc- 9077
Query: 506 gccccggaaattttgagttaccatt 530
|||||||||| ||||||||||||
Sbjct: 9078 -gcccggaaattatgagttaccatt 9101
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,940
Number of Sequences: 1807
Number of extensions: 10940
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)