BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH01RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig911 1596 0.0
>3x_Contig911
Length = 4722
Score = 1596 bits (805), Expect = 0.0
Identities = 828/833 (99%), Gaps = 2/833 (0%)
Strand = Plus / Plus
Query: 49 aagtcggttgcttgtgataacgtgcggtacatcccaggggaaagatgagatattccagta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 aagtcggttgcttgtgataacgtgcggtacatcccaggggaaagatgagatattccagta 1202
Query: 109 tatcccaataatgaactgtatattctcggcaaccaaaatgaaatgttccatcgatgtggt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 tatcccaataatgaactgtatattctcggcaaccaaaatgaaatgttccatcgatgtggt 1262
Query: 169 taagattggtgggggtatagaaagcactttcttgcaacaagcaactgatgccactagtgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 taagattggtgggggtatagaaagcactttcttgcaacaagcaactgatgccactagtgg 1322
Query: 229 ggtgtacttacatgtagaaaacacaagaggtttaattcaatatttatcaacggccatgtt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 ggtgtacttacatgtagaaaacacaagaggtttaattcaatatttatcaacggccatgtt 1382
Query: 289 tatagatccgtctttgagaaatgtgataattaaaccaaatcaagggtctgtcgattttag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 tatagatccgtctttgagaaatgtgataattaaaccaaatcaagggtctgtcgattttag 1442
Query: 349 aacttcatgttttctaacgggtaaagtggtcgctgtcggatttgtgtgtagtgtttgctt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 aacttcatgttttctaacgggtaaagtggtcgctgtcggatttgtgtgtagtgtttgctt 1502
Query: 409 atgtgtgctttcagtgatacctccaggtcagaaatgtcctgcttgtgactcgccgtttga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 atgtgtgctttcagtgatacctccaggtcagaaatgtcctgcttgtgactcgccgtttga 1562
Query: 469 cagtaagattatcgccagactcagaagaaagcctgtattgagcaatggtgtaccgaagaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 cagtaagattatcgccagactcagaagaaagcctgtattgagcaatggtgtaccgaagaa 1622
Query: 529 gaaaaatgttagtaataaatagcatcggggttttccatacctatttaaagtacatatata 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 gaaaaatgttagtaataaatagcatcggggttttccatacctatttaaagtacatatata 1682
Query: 589 atcactgtcagcaaccactatttaaaatatcaaagtcaaactgatcactatagtaatggt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 atcactgtcagcaaccactatttaaaatatcaaagtcaaactgatcactatagtaatggt 1742
Query: 649 gtctctttaaatgatcgattctctcgtttgaatttgaaaacgtcatcgaacaatcttgtt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 gtctctttaaatgatcgattctctcgtttgaatttgaaaacgtcatcgaacaatcttgtt 1802
Query: 709 ccaggcatcttagcctgtaattaccgttcttgaacggattatgaaattcttcgatatgta 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1803 ccaggcatcttagcctgtaattaccgttcttgaacggattatgaaattcttcgatatgta 1862
Query: 769 attccatcccatactcactagcaaagttccttaagcattgcgtacatacgttctcgtgca 828
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1863 attccatccaatactcactagcaaagttccttaagcattgcgtacatacgttctcgtgca 1922
Query: 829 tctgggctgacatgactagggtacaattcttatagaaccccattcatgatcac 881
||| ||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 1923 tct-ggctgacatgactagggtacaattc-tataggaacccattcatgatcac 1973
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5939
Number of Sequences: 1807
Number of extensions: 5939
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)