BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH02FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1346 1037 0.0
>3x_Contig1346
Length = 6154
Score = 1037 bits (523), Expect = 0.0
Identities = 670/707 (94%), Gaps = 9/707 (1%)
Strand = Plus / Minus
Query: 85 ctaaatttgttggaccatcaatca-ttctagcgtacttgccatacaactcagaaagagac 143
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6049 ctaaatttgttggaccgtcaatcaattctagcgtacttgccatacaactcagaaagagac 5990
Query: 144 actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccttta 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5989 actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccgtta 5930
Query: 204 tacaggtttaactctttacgaagaacgcgacgaccaagttttcaaattggactcctctgt 263
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 tacaggtttaaccctt-acgaagaacgcgacgaccaagttttcaaattggactcctctgt 5871
Query: 264 tatcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagctca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 tatcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagctca 5811
Query: 324 aaagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattgaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 aaagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattgaa 5751
Query: 384 acaagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccctcc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5750 acaagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccctcc 5691
Query: 444 tcttcacatttatcatgcttctgacggtggcaatgcagctaatttagc-aaaagattggg 502
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5690 tcttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaagattggg 5631
Query: 503 tacaaaggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgttct 562
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5630 tacaagggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgttct 5571
Query: 563 agaagagttaccaggtgaagaagatgttgaatttataacgtcaactgctggttcaaggtg 622
||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct: 5570 agaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctgg-tcaaggtg 5512
Query: 623 aattcccttaagatggtaaggcatttttgggatgctttggaatcttctactgacctcgat 682
|||||||| |||||||||||||| |||||||||||| || | ||||||||||||||||||
Sbjct: 5511 aattccctcaagatggtaaggca-ttttgggatgctctgaagtcttctactgacctcgat 5453
Query: 683 ttaac-tcttttgatttctccgggttttgttttaggtgact-tgcataatgggcccct-a 739
||| | ||||| ||||||||| | |||| ||||||||||| |||||| ||| | | | |
Sbjct: 5452 ttagcttctttgaatttctccgtg-tttggtttaggtgactctgcatactggccacgtaa 5394
Query: 740 ggaaaaccccccttacttaaacaaacccgttaaggtattgttcaaga 786
|||| || ||| ||||| |||||||||| ||||| ||||||||||
Sbjct: 5393 ggaagacgcccattactacaacaaacccgctaaggatttgttcaaga 5347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6937
Number of Sequences: 1807
Number of extensions: 6937
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)