BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH02RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1505 0.0
>3x_Contig1795
Length = 38452
Score = 1505 bits (759), Expect = 0.0
Identities = 824/840 (98%), Gaps = 6/840 (0%)
Strand = Plus / Plus
Query: 46 agatatcaatctatcccaattgatcactactatttgttgccatttgagttccattctaat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11101 agatatcaatctatcccaattgatcactactatttgttgccatttgagttccattctaat 11160
Query: 106 aacaaaagtttagagtggcctaaacttgaaggaagcgtctaccaaaatggatctgttgaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11161 aacaaaagtttagagtggcctaaacttgaaggaagcgtctaccaaaatggatctgttgaa 11220
Query: 166 tatttattgaaagatgagttcaatgtctctaagacattgaaatcagaagatgagactgag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11221 tatttattgaaagatgagttcaatgtctctaagacattgaaatcagaagatgagactgag 11280
Query: 226 tggactctaagagctcacagatacaagctacacgacgtcaagatttttgttatctcggta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11281 tggactctaagagctcacagatacaagctacacgacgtcaagatttttgttatctcggta 11340
Query: 286 tatcaggatctttttaacagaattaactctgcagaaccgttcgatattttcatcgttggt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11341 tatcaggatctttttaacagaattaactctgcagaaccgttcgatattttcatcgttggt 11400
Query: 346 actgcttacgttgcaatggcatatactttgatatctttattcatcgaaatgcgagttact 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11401 actgcttacgttgcaatggcatatactttgatatctttattcatcgaaatgcgagttact 11460
Query: 406 ggatctaaattctggattgctttagctgctgtggtcaactcaggaactgctttttttgtc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11461 ggatctaaattctggattgctttagctgctgtggtcaactcaggaactgctttttttgtc 11520
Query: 466 gcactttacgcaactcaaaagatttgcaacaaaccagtaaccgcactgagtttgattgaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11521 gcactttacgcaactcaaaagatttgcaacaaaccagtaaccgcactgagtttgattgaa 11580
Query: 526 ggtgttccattcgttgtggttattgttggtttcaagcataagattaagttggccaagtac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11581 ggtgttccattcgttgtggttattgttggtttcaagcataagattaagttggccaagtac 11640
Query: 586 gtagtggaccagttcaagagattcgatgtctcacaaaaggtaacgacttatcaagtcgtc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11641 gtagtggaccagttcaagagattcgatgtctcacaaaaggtaacgacttatcaagtcgtc 11700
Query: 646 tatgatgcaatgttgaacgaaggtcaacgtctcgttcaagatcatttgttatgtcttatc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11701 tatgatgcaatgttgaacgaaggtcaacgtctcgttcaagatcatttgttatgtcttatc 11760
Query: 706 gctttttggtggttgtnngccgtgtatgcttcgtcccttatccgctctttcgaacttttg 765
|| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11761 gc-ttttggtggttgt--gccgtgtatgcttcgt-ccttatccgctctttcgaacttttg 11816
Query: 766 cttcttctgtgcctgtataattaggatttgnatttgttcatcacatcaacttntttgnca 825
||||||||||| |||||| ||||||||||| ||||||||||||||||||||| || ||
Sbjct: 11817 cttcttctgtg-ctgtattattaggatttg-atttgttcatcacatcaactttctttgca 11874
Query: 826 gcatccttaacacttaaattgggaataaatattattcacagggctaccaccatcaaacaa 885
||| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 11875 gcagtcttagcacttaaattggaaataaatattatccacagggctaccaccatcaaacaa 11934
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6467
Number of Sequences: 1807
Number of extensions: 6467
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)