BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH03FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig947 1009 0.0
>3x_Contig947
Length = 3468
Score = 1009 bits (509), Expect = 0.0
Identities = 572/589 (97%), Gaps = 3/589 (0%)
Strand = Plus / Minus
Query: 85 tacaagaatcttatgaattatttaagatgactccattactatataaggatggttctgaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 tacaagaatcttatgaattatttaagatgactccattactatataaggatggttctgaat 1684
Query: 145 gaaagtttggcttgtcctgaattatctttttcttctcctctcgttccgtatcatgttctc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 gaaagtttggcttgtcctgaattatctttttcttctcctctcgttccgtatcatgttctc 1624
Query: 205 aacggctcgtgtgtttttgaacagttccaacaaaaattttcgaactgagggtttgaatcg 264
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 aacggctcgtgtgttgatgaacagttccaacaaaaattttcgaactgagggtttgaatcg 1564
Query: 265 gtactctcccaataattcataaacttgttcaaacatttctgggctttggaatctactagg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 gtactctcccaataattcataaacttgttcaaacatttctgggctttggaatctactagg 1504
Query: 325 cccatacttggactggagagcagttatctctttgatcgcaccattcagaaggatattgtt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 cccatacttggactggagagcagttatctctttgatcgcaccattcagaaggatattgtt 1444
Query: 385 gcccatatcgcttactatccttaggatcctattgttgatcttgtcatcttcaaacacatc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 gcccatatcgcttactatccttaggatcctattgttgatcttgtcatcttcaaacacatc 1384
Query: 445 tggcagtttcgactcatttgtttgggatatctttcggatcgctcgttccaattcttgttt 504
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1383 tggcagtttcgactcatttgtttgggatatctctcggatcgctcgttccaattcttgttt 1324
Query: 505 gtcctcttcctgctgttcgggatt-acagacgtctcggatctttcccattccaaatagtt 563
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1323 gtcctcttcctgctggtcgggattcacagacgtctcggatctttcccattccaataagtt 1264
Query: 564 gtctaaaaggatctcatggtccccaactataatgttcgaatttagttcattgttacatat 623
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1263 gtctaaagggatctcatggtccccaactataatgttcgaattcagttcattgttacatat 1204
Query: 624 tgacccccccgttccgattgggttcattcccttcattcccattcaatct 672
|| | || ||||| ||||| |||||||| ||||| |||||||||||||
Sbjct: 1203 aga-cgccgcgttctgattgtgttcattcacttca-tcccattcaatct 1157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7086
Number of Sequences: 1807
Number of extensions: 7086
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)