BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH03RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig449 1043 0.0
>3x_Contig449
Length = 1952
Score = 1043 bits (526), Expect = 0.0
Identities = 563/575 (97%), Gaps = 1/575 (0%)
Strand = Plus / Minus
Query: 368 ttgactaatgataaatcattagaagtcagatgtaatgcttcatacggtgttggtttgttg 427
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 ttgactaatgatanaatattagaagtcagatgtaatgcttcatacggtgttggtttgttg 1893
Query: 428 attgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttatac 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 attgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttatac 1833
Query: 488 gaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 gaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaaa 1773
Query: 548 gaaatcgttgacagaactttctccaacgtatgcggatgtgtggccagaatgatcttgaag 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 gaaatcgttgacagaactttctccaacgtatgcggatgtgtggccagaatgatcttgaag 1713
Query: 608 caccaaaacctagttccactggaacacaccattccagctctactctcgcacttgccattc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 caccaaaacctagttccactggaacacaccattccagctctactctcgcacttgccattc 1653
Query: 668 aacactgcattcgaagaatacgatccgatcttcaaattattcttgaagttattccaagag 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 aacactgcattcgaagaatacgatccgatcttcaaattattcttgaagttattccaagag 1593
Query: 728 caaaacagcaccatcatcaatgaagcaccaaaggtcatcgcaattttcgcaactgttttc 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 caaaacagcaccatcatcaatgaagcaccaaaggtcatcgcaattttcgcaactgttttc 1533
Query: 788 gagaaggaaagtgaaagaattgaattagagacgaactctaccttnagcagagaaagaaac 847
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 1532 gagaaggaaagtgaaagaattgaattagagacgaactctaccttaggcagagaagaaaac 1473
Query: 848 ttgggaaagagaaaacagttccaatccgaagaaataaagc-acaagtcatcgaattattg 906
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1472 ttggaaaagagaaaacagttccaatccgaagaaataaagcaacaagtcatcgaattattg 1413
Query: 907 aaacatttgaacccacatttcaatggtgctgntgc 941
||||||||||||| ||| ||||||||||||| |||
Sbjct: 1412 aaacatttgaaccaacagttcaatggtgctgttgc 1378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7999
Number of Sequences: 1807
Number of extensions: 7999
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)