BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH05FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 977 0.0
>3x_Contig1464
Length = 11693
Score = 977 bits (493), Expect = 0.0
Identities = 583/609 (95%), Gaps = 3/609 (0%)
Strand = Plus / Plus
Query: 82 cttacgatttcttaaagaaggcattagacattgcagaaagaagaggagacagatcaaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cttacgatttcttaaagaaggcattagacattgcagaaagaagaggagacagatcaaaaa 1140
Query: 142 tagggtttgtgtattttaggttttgcatacactactataattgtaagaaatactgtctag 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tagggtttgtgtattttaggttttgcatacactactataattgtaagaaatactgtctag 1200
Query: 202 ctcaagaattttttcttaaatgtgaatcatatggattcaaagatgacactttaccaatgt 261
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ctcaagaattcatgcagaaatgtgaatcatatggattcaaagatgacactttaccaatgt 1260
Query: 262 ggaaacataacattgatactgcaatcaggaagcatgtcaagaaggatgtgatggatgaga 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ggaaacataacattgatactgcaatcaggaagcatgtcaagaaggatgtgatggatgaga 1320
Query: 322 gggcgaaggctgtgaggtctcctgagacagacaaagcttcttcagacatgtctccttcgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gggcgaaggctgtgaggtctcctgagacagacaaagcttcttcagacatgtctccttcgg 1380
Query: 382 aggcacaaaaggacctaccaacactttctcaggaggataaattaaaaatggatttgtatc 441
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1381 aggcacaaaaggacctaccaacactttctcaggaggataaattaaaaatggattggtatc 1440
Query: 442 aaagctctagcactgttacactctcgttggtcaccaaaaatctacctaactcaaaaagtg 501
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1441 aaagctctagcactgttacactctcgttgttcaccaaaaatctacctaactcaaaaagtg 1500
Query: 502 atgttaatgtcagcatcaaaggctctcatctaagcatttcatatcctataccagattagg 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1501 atgttaatgtcagcatcaaaggctctcatctaagcatttcatatcctataccagataagg 1560
Query: 562 gattcag-attttaatattctattatggtgagtcacaacgttgacccgactgctattcaa 620
|| |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1561 ga-tcagaatttcaatattctatcatgttgagtcacaacgttgacccgactgctattcaa 1619
Query: 621 gtttttgtattcacttaaaaacttgaaatttccctaggcaaaacttgaacattttcattg 680
|||| |||||||||| | || || ||| || | ||||||||| | |||||| | ||| ||
Sbjct: 1620 gtttctgtattcactaagaagctagaagttacactaggcaaagc-tgaacagtatcaatg 1678
Query: 681 gaagagtct 689
|||||||||
Sbjct: 1679 gaagagtct 1687
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7410
Number of Sequences: 1807
Number of extensions: 7410
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)