BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH06FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig874 866 0.0
3x_Contig769 139 1e-32
>3x_Contig874
Length = 1825
Score = 866 bits (437), Expect = 0.0
Identities = 463/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Minus
Query: 87 ctgcttattgggtaaatcccaataggctgtgaaatactctcccaatacagggttcaatgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgcttattgggtaaatcccaataggctgtgaaatactctcccaatacagggttcaatgg 445
Query: 147 cttcttgaccgctttaggggcaatatgccaccctgaaaggtaccatttaacaacttttat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttcttgaccgctttaggggcaatatgccaccctgaaaggtaccatttaacaacttttat 385
Query: 207 aaacctttccaatttttctttttccttatgagcttctagtaaaaggtctgggaattgcaa 266
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaacctttccaattcgtctttttccttatgagcttctagtaaaaggtctgggaattgcaa 325
Query: 267 ttggtttgcaattctctctaacatcgatttcttctctaaaatgaatgtaggtaaagtgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttggtttgcaattctctctaacatcgatttcttctctaaaatgaatgtaggtaaagtgat 265
Query: 327 ccgtgacaaatcacaccctggcttcaattgagtaataatacccataaggatggattgacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccgtgacaaatcacaccctggcttcaattgagtaataatacccataaggatggattgacc 205
Query: 387 cgcatcatcattttcgtcgatatcatcggtatcctctacaatgtttggatcagcaacctg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cgcatcatcattttcgtcgatatcatcggtatcctctacaatgtttggatcagcaacctg 145
Query: 447 agggtgggctgttgaagagatatcgccggtagatgcactgatcttcgacttcagttt-aa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 144 agggtgggctgttgaagagatatcgccggtagatgcactgatcttcgacttcagtttaaa 85
Query: 506 aggcatattgctaattg-attatgatgttcaaattaagtctctttaatt 553
||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 84 aggcatattgctaattgtattatgatgttcaaataaagtctcttcaatt 36
>3x_Contig769
Length = 2663
Score = 139 bits (70), Expect = 1e-32
Identities = 243/286 (84%), Gaps = 11/286 (3%)
Strand = Plus / Plus
Query: 569 tcaacgttaggactaaaacaaacggtattgaatcagttatcaatcccaactttttgttta 628
||||||| ||||||||||||||||||||||||||||||||| ||| ||||| | ||||
Sbjct: 12 tcaacgtagggactaaaacaaacggtattgaatcagttatcagtccaaacttctgtttta 71
Query: 629 tttattagaaaatacctag-tcccatggtatacaggaataaatgaatcttcccgtaataa 687
|||||||| |||||||||| ||| |||||||||||| ||||||| |||||||||||||||
Sbjct: 72 tttattag-aaatacctagttccgatggtatacagg-ataaatg-atcttcccgtaataa 128
Query: 688 aatcatcaattggatttggaatcaaagaaatcactttaaagttttaaaacctggccctta 747
| |||| || ||||| |||||||||||||||| ||||||| |||||| ||| ||| |
Sbjct: 129 atctatcagtt-gattt-gaatcaaagaaatcac-ttaaagtagtaaaacgtgg-cctga 184
Query: 748 attattaacaacctttcaaacagcactttttaaaaaatcgggagcctatcaatgctaaac 807
|| || ||||| | |||||||||||| |||| ||| ||||| || ||||||||||| |||
Sbjct: 185 ataatcaacaa-cgttcaaacagcac-ttttgaaagatcggtagtctatcaatgctcaac 242
Query: 808 gtccttattattgaatgttttacggatttaaatgggaacctttact 853
||||| |||| | |||| | |||| |||||| ||||||||||||
Sbjct: 243 gtcctatttatag-atgtatagcggaattaaattggaacctttact 287
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,897
Number of Sequences: 1807
Number of extensions: 13897
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 2
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)