BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH06RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig186 1427 0.0
>3x_Contig186
Length = 1329
Score = 1427 bits (720), Expect = 0.0
Identities = 827/855 (96%), Gaps = 6/855 (0%)
Strand = Plus / Plus
Query: 48 ttaattagagttagagacataaccaacaaggattcgatttgtagtgtatcaggaacagga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttaattagagttagagacataaccaacaaggattcgatttgtagtgtatcaggaacagga 329
Query: 108 gttcctgttcgcaacgtattctgtcttttttactgaactcaaacggaaatcaaattcctc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gttcctgttcgcaacgtattctgtcttttttactgaactcaaacggaaatcaaattcctc 389
Query: 168 ttcatgtcgggaaatgaacaagtaaaaggaacgacgaagataatgactgtctgtatggaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttcatgtcgggaaatgaacaagtaaaaggaacgacgaagataatgactgtctgtatggaa 449
Query: 228 ataccatcatttggattgttttttttttgagtatatcgattatgatgaccgctgtcgccc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ataccatcatttggattgttttttttttgagtatatcgattatgatgaccgctgtcgccc 509
Query: 288 caaacggatttcgaaaatatgaacgattcgactagcattagccaaacactgaaaattctg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 caaacggatttcgaaaatatgaacgattcgactagcattagccaaacactgaaaattctg 569
Query: 348 atcaatcgattactttattaaaataaactgtccaggcaatacagtacaagttatatcttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atcaatcgattactttattaaaataaactgtccaggcaatacagtacaagttatatcttc 629
Query: 408 ttgtttgtttgactttcttcatttccggatatattcgggtagtcgaagtgtacgttagat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttgtttgtttgactttcttcatttccggatatattcgggtagtcgaagtgtacgttagat 689
Query: 468 gtgtcagtggattactcggcattctctatcttaaatatatagacctattaatgatgaact 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gtgtcagtggattactcggcattctctatcttaaatatatagacctattaatgatgaact 749
Query: 528 aaaagtttccatgctaatcatgaataanattcaaaattttaaaggattagaaacacgctt 587
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 750 aaaagtttccatgctaatcatgaataaaattcaaaattttaaaggattagaaacacgctt 809
Query: 588 tttgttatctctaacagtcctgaatacgtttatatatagcattagctgttccattcttgt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tttgttatctctaacagtcctgaatacgtttatatatagcattagctgttccattcttgt 869
Query: 648 acttgtaacttgtgcttttttcgtagtgtgtgttttttttatttttgtgccccgtatctg 707
||||||||||||||| |||| |||||||||| |||||||||||||| || |||||||
Sbjct: 870 acttgtaacttgtgc-ttttcggtagtgtgtg-tttttttatttttggtgccggtatctg 927
Query: 708 aaattgtaaacacgtcttgaaaagatgtcaatagaaataaaagtgttatctttagactaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 928 -aattgtaaacacgtcttgaaaagatgtcaatagaaataaaagtgttatcttaggactaa 986
Query: 768 aaacggtagattctagattatacaaagctctgagacagtgaa-caccaatttaaa-cgtt 825
||||| ||| |||||||||||| ||||||||||||||||| ||| ||| |||| ||||
Sbjct: 987 aaacgtaggatcctagattatacagagctctgagacagtgaaccacaaatctaaaccgtt 1046
Query: 826 tgcgatac-cacagggcccttctgaaagggaattcttcggctttcattcctccttttttt 884
||||||| ||||||||| |||||||||||| |||||| |||| |||||||||||||||
Sbjct: 1047 agcgatacacacagggcctttctgaaagggatttcttctgcttctattcctccttttttt 1106
Query: 885 gttacatttttttga 899
|||||||||||||||
Sbjct: 1107 gttacatttttttga 1121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9044
Number of Sequences: 1807
Number of extensions: 9044
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)