BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZH07FM1.SCF screened BAC_end (957 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig380 258 2e-68 >3x_Contig380 Length = 1539 Score = 258 bits (130), Expect = 2e-68 Identities = 192/206 (93%), Gaps = 5/206 (2%) Strand = Plus / Plus Query: 290 tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattataag-tagag 348 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 1 tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattattaggtagag 60 Query: 349 gacgtggtggaaataccttggttaacccaaagggagttcttgcgtcaacaactgcaatta 408 |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 gacgtggtggaaatacgtgggttaacccaaggggagttcttgcgtcaacaactgcaatta 120 Query: 409 aattacctgctgtatcaacaagtttctgaagaaagaactccgatcgtttttcgtgcaata 468 | ||||||||||||||| |||| ||||| |||||| |||||||||| ||||||||||||| Sbjct: 121 atttacctgctgtatcaccaag-ttctggagaaag-actccgatcg-ttttcgtgcaata 177 Query: 469 tctagctttggttaccttactgtaaa 494 ||||||| | |||| ||||||||||| Sbjct: 178 tctagctat-gttagcttactgtaaa 202 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9311 Number of Sequences: 1807 Number of extensions: 9311 Number of successful extensions: 91 Number of sequences better than 1.0e-20: 1 length of query: 957 length of database: 10,358,551 effective HSP length: 16 effective length of query: 941 effective length of database: 10,329,639 effective search space: 9720190299 effective search space used: 9720190299 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)