BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZH07FM1.SCF screened BAC_end
         (957 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig380                                                          258   2e-68

>3x_Contig380 
          Length = 1539

 Score =  258 bits (130), Expect = 2e-68
 Identities = 192/206 (93%), Gaps = 5/206 (2%)
 Strand = Plus / Plus

                                                                       
Query: 290 tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattataag-tagag 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1   tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattattaggtagag 60

                                                                       
Query: 349 gacgtggtggaaataccttggttaacccaaagggagttcttgcgtcaacaactgcaatta 408
           |||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61  gacgtggtggaaatacgtgggttaacccaaggggagttcttgcgtcaacaactgcaatta 120

                                                                       
Query: 409 aattacctgctgtatcaacaagtttctgaagaaagaactccgatcgtttttcgtgcaata 468
           | ||||||||||||||| |||| ||||| |||||| |||||||||| |||||||||||||
Sbjct: 121 atttacctgctgtatcaccaag-ttctggagaaag-actccgatcg-ttttcgtgcaata 177

                                     
Query: 469 tctagctttggttaccttactgtaaa 494
           ||||||| | |||| |||||||||||
Sbjct: 178 tctagctat-gttagcttactgtaaa 202


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9311
Number of Sequences: 1807
Number of extensions: 9311
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)