BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZH07RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1080                                                        1318   0.0  

>3x_Contig1080 
          Length = 4249

 Score = 1318 bits (665), Expect = 0.0
 Identities = 708/720 (98%), Gaps = 2/720 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   tacaaattctgagaagaatgtcgtatacacctcaggtaagagtattttgtgaattgttaa 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2697 tacaaattctgagaagaatgtcgtatacacctcaggtaagagtattttgtgaattgttaa 2638

                                                                        
Query: 107  cggcgtctgcggtgccacggtgatgacactgaatctgtccatcgggttgatatgaaatga 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2637 cggcgtctgcggtgccacggtgatgacactgaatctgtccatcgggttgatatgaaatga 2578

                                                                        
Query: 167  gctaacatctgtcctcaaaaacgtaacaaaacaatttgaaaatgtcggtacagggtcggg 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 gctaacatctgtcctcaaaaacgtaacaaaacaatttgaaaatgtcggtacagggtcggg 2518

                                                                        
Query: 227  ataccattgttttatcgtttcatggaagaatccgtcttcattgataggataacaataata 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2517 ataccattgttttatcgtttcatggaagaatccgtcttcattgataggataacaataata 2458

                                                                        
Query: 287  acaaatgtggccacaactatgttcttttctgaatcgagtgatttcttttaagctccgttc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 acaaatgtggccacaactatgttcttttctgaatcgagtgatttcttttaagctccgttc 2398

                                                                        
Query: 347  tgcagctgttgcgtcagaagattgtactatgtccgatctccaagagaaagaatctctata 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 tgcagctgttgcgtcagaagattgtactatgtccgatctccaagagaaagaatctctata 2338

                                                                        
Query: 407  ccgtttataggaaggtgatgcttgaaattcttcgtcttgaacgtaatcgtctggtaagtt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 ccgtttataggaaggtgatgcttgaaattcttcgtcttgaacgtaatcgtctggtaagtt 2278

                                                                        
Query: 467  caatatgaacccaaatatgtcaccaaccgcagaacatacatatagaaacttatctttata 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 caatatgaacccaaatatgtcaccaaccgcagaacatacatatagaaacttatctttata 2218

                                                                        
Query: 527  ctctaaaccaacaatggttgtatcatttgtagttatactcgaaatcattggtacgcaaaa 586
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2217 ctctaaaccaacaatggttgtatcatttgtagttatactcgaagtcattggtacgcaaaa 2158

                                                                        
Query: 587  tagtagaaaatctggtcgt-aaggaacgttattggttaccttaaaaatgtagtcctttat 645
            ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 2157 tagtagaaaatctggtcgtaaaggaacgttattggttaccttaaaattgtagtcctttat 2098

                                                                        
Query: 646  tatttcgattatgccattatttcttgncaccaaaagaaagtctgaatgctcttgattgtg 705
            ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||
Sbjct: 2097 tatttcgattatgccattattccttgcaaccaaaagaaagtctgaatgctcttgattgtg 2038

                                                                        
Query: 706  cagatattttgatgttcgtacattaggcatacttctttggtcgtagattacagaactttt 765
            |||||||||||||||  ||||| ||||||||| || |||||||||||| |||||||||||
Sbjct: 2037 cagatattttgatgtcggtacaataggcatac-tccttggtcgtagataacagaactttt 1979


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7149
Number of Sequences: 1807
Number of extensions: 7149
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)