BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZH08RM1.SCF screened BAC_end
         (904 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig532                                                         1394   0.0  

>3x_Contig532 
          Length = 2251

 Score = 1394 bits (703), Expect = 0.0
 Identities = 812/837 (97%), Gaps = 9/837 (1%)
 Strand = Plus / Plus

                                                                        
Query: 50   gcatccgggaaggtgaaagagggtactcccagcaagcataaacatcacacacaagtgtca 109
            |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 791  gcatccgggaaggtgaaagagggtac-cccagcaag-agaaacatcacacacaagtgtca 848

                                                                        
Query: 110  ctggaagaaatacccttggaatagacattccgcaacaattatccgtcaacccatccaaaa 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  ctggaagaaatacccttggaatagacattccgcaacaattatccgtcaacccatccaaaa 908

                                                                        
Query: 170  atgcagtagaattctttgacaagagaaatcacaacatcccggcaacaagcaatatctcat 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  atgcagtagaattctttgacaagagaaatcacaacatcccggcaacaagcaatatctcat 968

                                                                        
Query: 230  ctacgaactggctctatcatcatgctgctgcatgcagtagattcaacagtgatcttttct 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  ctacgaactggctctatcatcatgctgctgcatgcagtagattcaacagtgatcttttct 1028

                                                                        
Query: 290  acgatagagaacgcattcttctcatcgaaaacctcggactaagagatacgtacacgaacg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 acgatagagaacgcattcttctcatcgaaaacctcggactaagagatacgtacacgaacg 1088

                                                                        
Query: 350  tcttacatataccacaatccacacaatcgacgagagtgatatcagtgaagaaagtgaaag 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 tcttacatataccacaatccacacaatcgacgagagtgatatcagtgaagaaagtgaaag 1148

                                                                        
Query: 410  gaaacacaagccaagttatgtacgaaacaagaatcaaagctcttgacctagcaagacctt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 gaaacacaagccaagttatgtacgaaacaagaatcaaagctcttgacctagcaagacctt 1208

                                                                        
Query: 470  gcaccggtctttctgacgtccctacatcgatgtacgaagacatcttggacgaagatatag 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 gcaccggtctttctgacgtccctacatcgatgtacgaagacatcttggacgaagatatag 1268

                                                                        
Query: 530  tcgctgctatagaagaacaaaagagattcgaaacaagcctataacatagctgaactgacc 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 tcgctgctatagaagaacaaaagagattcgaaacaagcctataacatagctgaactgacc 1328

                                                                        
Query: 590  tcccatgtatacgtgtatatctcaacatacgtaataagagtgtattatactaagtggccg 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 tcccatgtatacgtgtatatctcaacatacgtaataagagtgtattatactaagtggccg 1388

                                                                        
Query: 650  ggtaacgatatgtncttgctctacc-aaaatgaatttgggcttntcaaccagaacaa-cc 707
            ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct: 1389 ggtaacgatatgtccttgctctaccaaaaatgaatttgggcttttcaaccagaacaaccc 1448

                                                                        
Query: 708  cat-aggtgaacagacaagggcattttgcaccgat-aaaggagcgttagcagttacattt 765
            ||| |||||||||||||||| |||||  ||||||| |||||||||||| |||||||||||
Sbjct: 1449 cataaggtgaacagacaaggccatttgccaccgataaaaggagcgtta-cagttacattt 1507

                                                                        
Query: 766  gcaatctacagtgggtgcattgtgaaatttagaccctatagtagtgt-aaatagccagtt 824
            |||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 1508 gcaatctacagtggttgcattgtgaatttaagaccctatagtagtgtaaaatagccaggt 1567

                                                                     
Query: 825  gtttggtgaaaacgctg-ttttgtctcggtttgttttcgggttaacaaagattttcc 880
            ||||| |||||  |||| ||||||||||||||||||  | |||||||||||||||||
Sbjct: 1568 gtttgttgaaacggctgtttttgtctcggtttgtttcggtgttaacaaagattttcc 1624


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5322
Number of Sequences: 1807
Number of extensions: 5322
Number of successful extensions: 23
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)