BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZH09FM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1386                                                         884   0.0  

>3x_Contig1386 
          Length = 5452

 Score =  884 bits (446), Expect = 0.0
 Identities = 496/510 (97%), Gaps = 2/510 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 4579

                                                                        
Query: 148  ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 4639

                                                                        
Query: 208  tcccaaccatcttctaagtttaaagagtttatgatacaaaagagagggagggagagggag 267
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 tcccaaccatctcccaagtttaaagagtttatgatacaaaagagagggagggagagggag 4699

                                                                        
Query: 268  atgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaata 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 atgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaata 4759

                                                                        
Query: 328  gagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttcttat 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 gagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttcttat 4819

                                                                        
Query: 388  accccccccctatttttttttcgttcttcctttattgtatacatataccataccctgcta 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 accccccccctatttttttttcgttcttcctttattgtatacatataccataccctgcta 4879

                                                                        
Query: 448  cttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctactt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 cttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctactt 4939

                                                                        
Query: 508  actattatttacacaacaaagccgttaaattataa-tggcccttgcctcttcct-ttttt 565
            |||||||||   ||||||||||||||||||||||| ||||| ||| |||| ||| ||| |
Sbjct: 4940 actattattacaacaacaaagccgttaaattataattggccattgtctctccctctttct 4999

                                          
Query: 566  tttgcccttccttttttttttttaaaattc 595
             | |||||||||||||||||||| ||||||
Sbjct: 5000 ctcgcccttccttttttttttttcaaattc 5029


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,472
Number of Sequences: 1807
Number of extensions: 25472
Number of successful extensions: 303
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)