BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZH09FM1.SCF screened BAC_end (935 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1386 884 0.0 >3x_Contig1386 Length = 5452 Score = 884 bits (446), Expect = 0.0 Identities = 496/510 (97%), Gaps = 2/510 (0%) Strand = Plus / Plus Query: 88 ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4520 ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 4579 Query: 148 ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4580 ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 4639 Query: 208 tcccaaccatcttctaagtttaaagagtttatgatacaaaagagagggagggagagggag 267 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4640 tcccaaccatctcccaagtttaaagagtttatgatacaaaagagagggagggagagggag 4699 Query: 268 atgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaata 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4700 atgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaata 4759 Query: 328 gagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttcttat 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4760 gagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttcttat 4819 Query: 388 accccccccctatttttttttcgttcttcctttattgtatacatataccataccctgcta 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4820 accccccccctatttttttttcgttcttcctttattgtatacatataccataccctgcta 4879 Query: 448 cttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctactt 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4880 cttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctactt 4939 Query: 508 actattatttacacaacaaagccgttaaattataa-tggcccttgcctcttcct-ttttt 565 ||||||||| ||||||||||||||||||||||| ||||| ||| |||| ||| ||| | Sbjct: 4940 actattattacaacaacaaagccgttaaattataattggccattgtctctccctctttct 4999 Query: 566 tttgcccttccttttttttttttaaaattc 595 | |||||||||||||||||||| |||||| Sbjct: 5000 ctcgcccttccttttttttttttcaaattc 5029 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,472 Number of Sequences: 1807 Number of extensions: 25472 Number of successful extensions: 303 Number of sequences better than 1.0e-20: 1 length of query: 935 length of database: 10,358,551 effective HSP length: 16 effective length of query: 919 effective length of database: 10,329,639 effective search space: 9492938241 effective search space used: 9492938241 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)