BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH09RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1579 1366 0.0
>3x_Contig1579
Length = 11264
Score = 1366 bits (689), Expect = 0.0
Identities = 828/853 (97%), Gaps = 16/853 (1%)
Strand = Plus / Minus
Query: 47 atctaccatcccaggtaccagttaaattagctcacctgttttgcctgtgaacaatctcgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 atctaccatcccaggtaccagttaaattagctcacctgttttgcctgtgaacaatctcgt 1631
Query: 107 gaatgtgcgttgatgttcaatctttatagccttgatatgaaaaaatagcaatctgaaact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gaatgtgcgttgatgttcaatctttatagccttgatatgaaaaaatagcaatctgaaact 1571
Query: 167 tcaaatgcgaatctacgttaacaattaccgtgtaccaaagaaataagaactacgaacgtc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 tcaaatgcgaatctacgttaacaattaccgtgtaccaaagaaataagaactacgaacgtc 1511
Query: 227 gtactggcaactacatatagcaagctacatttcataccaaacttttctaagaggacatag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 gtactggcaactacatatagcaagctacatttcataccaaacttttctaagaggacatag 1451
Query: 287 gactttatcatttaatcatttcccgtggagcattcgttcacactagaaatatagaactga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 gactttatcatttaatcatttcccgtggagcattcgttcacactagaaatatagaactga 1391
Query: 347 acacatattgaatgaggctttgaacttagatcaaagacggtgagatttactaataacatc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 acacatattgaatgaggctttgaacttagatcaaagacggtgagatttactaataacatc 1331
Query: 407 agaagacataactatcataatgtcagaatatgaggttgaccaagaggacgatatggttgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 agaagacataactatcataatgtcagaatatgaggttgaccaagaggacgatatggttgg 1271
Query: 467 gtacatatcgataaaagattacgcatatgacgaatcaaatccgttacattttggttattt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 gtacatatcgataaaagattacgcatatgacgaatcaaatccgttacattttggttattt 1211
Query: 527 tgaagaagatgatgaagatcagaacaaccttcgattgagtgggaacagagaaagtgtgtt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 tgaagaagatgatgaagatcagaacaaccttcgattgagtgggaacagagaaagtgtgtt 1151
Query: 587 actaccagatgattatatcgttaataagagagccatagcgatgtatgcttttgtcccaga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 actaccagatgattatatcgttaataagagagccatagcgatgtatgcttttgtcccaga 1091
Query: 647 aaatgtatacgagttggagttg-aagaaggagatgtcgtatatat-agttacaagcatgg 704
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 1090 aaatgataacgagttggagttgaaagaaggagatgtcgtatatataagttacaagcatgg 1031
Query: 705 gcaagggtggttagtggcagaaaatcacgatagatcccagacaggatttggtaccnggaa 764
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 1030 ccaagggtggttagtggcagaaaatcacgatagatccaagacagga-ttggtacc-ggaa 973
Query: 765 gagtatgttgcaggttgatttgaagacgattggcgaaagacaacggttaggtattgagaa 824
||||||| |||| ||||| |||||||||| ||||| |||||||||| |||||| ||||||
Sbjct: 972 gagtatg-tgca-gttga-ttgaagacga-tggcg-aagacaacgg-taggta-tgagaa 920
Query: 825 tccttaggccgtttttatctttactcaaatgattacgcaaaagcatgttctaatattcac 884
||| ||||||| ||||||| ||||||||||||| |||| | |||||| |||||| ||||
Sbjct: 919 tcc-taggccg-ttttatc-ttactcaaatgataacgc-agagcatg-tctaattatcac 865
Query: 885 gatgatgattggg 897
|||||||||||||
Sbjct: 864 gatgatgattggg 852
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6936
Number of Sequences: 1807
Number of extensions: 6936
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)