BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH10FM1.SCF screened BAC_end
(1065 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1360 238 2e-62
>3x_Contig1360
Length = 8285
Score = 238 bits (120), Expect = 2e-62
Identities = 160/168 (95%), Gaps = 4/168 (2%)
Strand = Plus / Minus
Query: 184 tagtaagagagatgtcgtctcttctaattccgatataatgtcctggtttgcagccaaagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7840 tagtaagagagatgtcgtctcttctaattccgatataatgtcctggtttgcagccaaagc 7781
Query: 244 tttatctcttttca-aaaaacttcattgcccaaaatgagaggagatttangggagaatgt 302
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7780 tttatctctttcgataaaaacttcattgcccaaaatgagaggagattta-gggagaatgg 7722
Query: 303 acctcaaagagttggggagaggcaacactggaagtttcttgttatact 350
||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct: 7721 acctcaaagagtt-gggagaggcaacact-gtagtttcttgttatact 7676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,336
Number of Sequences: 1807
Number of extensions: 34336
Number of successful extensions: 2670
Number of sequences better than 1.0e-20: 1
length of query: 1065
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1049
effective length of database: 10,329,639
effective search space: 10835791311
effective search space used: 10835791311
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)