BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH10RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1511 1302 0.0
>3x_Contig1511
Length = 8569
Score = 1302 bits (657), Expect = 0.0
Identities = 716/729 (98%), Gaps = 5/729 (0%)
Strand = Plus / Minus
Query: 60 atcaacatctcgcattactgtttcctaatttcgattttcgcttggatttcttgcggagta 119
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7382 atcaacat-tcgcatt-ctgtttcctaatttcgattttcgcttggatttcttgcggagta 7325
Query: 120 atcaaggaatacaaactacatacctcgatggaacgcaaatagtgatgtggaccaccgttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7324 atcaaggaatacaaactacatacctcgatggaacgcaaatagtgatgtggaccaccgttg 7265
Query: 180 caatttttcaccttcaacattgttggagaactaacatatagatacagagatattcataac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7264 caatttttcaccttcaacattgttggagaactaacatatagatacagagatattcataac 7205
Query: 240 ctactctaacaaaaatgctccgaaacgcacgaaaactattcttcctaactttttttttcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7204 ctactctaacaaaaatgctccgaaacgcacgaaaactattcttcctaactttttttttcc 7145
Query: 300 tatctgtataattgaaagtaccctgatcaacgttaagccagccaaactatcgcccgtaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7144 tatctgtataattgaaagtaccctgatcaacgttaagccagccaaactatcgcccgtaaa 7085
Query: 360 tcttatgttagtttattcatgcatagcactagacataacaatttgacggtccatgtcaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7084 tcttatgttagtttattcatgcatagcactagacataacaatttgacggtccatgtcaaa 7025
Query: 420 aaacgaatcaactccaaaaggaacaggttttagtgtatacagtgcaggtgcagtagtgca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7024 aaacgaatcaactccaaaaggaacaggttttagtgtatacagtgcaggtgcagtagtgca 6965
Query: 480 gtagtgcatctaagctcaacaaaaactttaaaatttcctaagctgatgttttttcttgtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6964 gtagtgcatctaagctcaacaaaaactttaaaatttcctaagctgatgttttttcttgtt 6905
Query: 540 ttgtactgacttgttagtaagaaaaaaaataactaccggaaggttttgctttgccagctt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6904 ttgtactgacttgttagtaagaaaaaaaataactaccggaaggttttgctttgccagctt 6845
Query: 600 ctttgcaactcaagtgcagatcgggggggggggcctaaatcctacacccctcctgatatc 659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6844 ctttgcaactcaagtgcagatcgggggggggggcgtaaatcctacacccctcctgatatc 6785
Query: 660 tcatacgcccacggtccacttcagcagttctacgtttgatcaaaaatcagagagagctgg 719
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6784 tcatacgcccacggtccacttcagcagttctacgttggatcaaaaatcagagagagctgc 6725
Query: 720 caattaaatnctcgtcatgcacttttaaagggagactagaacttgacctgaccagtggtt 779
||| |||| |||||||||||| ||| |||||||||||| ||||||||||||||||| |
Sbjct: 6724 aaatcaaat-ctcgtcatgcac-tttcaagggagactag-acttgacctgaccagtgtat 6668
Query: 780 tgacccaaa 788
|||||||||
Sbjct: 6667 tgacccaaa 6659
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9166
Number of Sequences: 1807
Number of extensions: 9166
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)