BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH11RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 1487 0.0
>3x_Contig1639
Length = 14140
Score = 1487 bits (750), Expect = 0.0
Identities = 841/861 (97%), Gaps = 9/861 (1%)
Strand = Plus / Plus
Query: 50 taaaaccactcattaggaaacgaaatatgagaacactccgagtatacgggaaaaccaaca 109
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8851 taaaaccactcattag-aaacgaaatatgagaacactccgagtatacgggaaaaccaaca 8909
Query: 110 atgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgctttcaat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8910 atgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgctttcaat 8969
Query: 170 acaaccattgatatgccaagaagccctcaaaacttagatattctcttattcccgaccgaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8970 acaaccattgatatgccaagaagccctcaaaacttagatattctcttattcccgaccgaa 9029
Query: 230 ttgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaacttaacca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9030 ttgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaacttaacca 9089
Query: 290 actacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataacatga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9090 actacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataacatga 9149
Query: 350 aaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagtataga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9150 aaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagtataga 9209
Query: 410 atcagctgttttcgccagtccctgcctagcccatgagatatcgtaagaaattgatgcgta 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9210 atcagctgttttcgccagtccctgcctagcccatgagatatcgtaagaaattgatgcgta 9269
Query: 470 ccaagatggtaacgggtccgcactggaaaagtctcagtggagttaaagctgctgagtgat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9270 ccaagatggtaacgggtccgcactggaaaagtctcagtggagttaaagctgctgagtgat 9329
Query: 530 aacagcacaacgctcccggatctaacctgtaaattctatatcatgccaaagttttttcga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9330 aacagcacaacgctcccggatctaacctgtaaattctatatcatgccaaagttttttcga 9389
Query: 590 aaagattgggtgtacggattatcagttaaagggaaacgcacaaaattattttcacgtttt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9390 aaagattgggtgtacggattatcagttaaagggaaacgcacaaaattattttcacgtttt 9449
Query: 650 gaggtacaatctgaaaagaccgttatgcatgtcaggggtaaaattcacgtacgggaaata 709
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 9450 gaggtacaatctgaaaagaccgttatgcatgtcaggggtaaattcaacgtacgggaaata 9509
Query: 710 tgcagttaagaaaaa-gcaccagatgcacgaaagtaccattttgctttcgtgaaataacg 768
|||||| |||||||| |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 9510 tgcagtaaagaaaaaggcaccagatgcacgaaggtaccattttgc-ttcgtgaaataacg 9568
Query: 769 caaacagtcgtacgcttctgcagaactgttcgtaagggtattttgaagcatatggctttg 828
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 9569 caaacagtcgtacgcttctgcagaactgttcgtaa-ggtattttgaggcatatggctt-- 9625
Query: 829 ggtttgataacagatattgaataatcgaat-ggagcagttaaagcttgacca-ttttcag 886
|| ||||||||||||||||||||||||||| | ||||| |||||| |||||| || ||||
Sbjct: 9626 gggttgataacagatattgaataatcgaatagaagcagctaaagc-tgaccagttctcag 9684
Query: 887 aagtttcaaagtgggaaggga 907
||| |||||||||||||||||
Sbjct: 9685 aaggttcaaagtgggaaggga 9705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6595
Number of Sequences: 1807
Number of extensions: 6595
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)