BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZH12FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1474 1150 0.0
>3x_Contig1474
Length = 10584
Score = 1150 bits (580), Expect = 0.0
Identities = 664/684 (97%), Gaps = 6/684 (0%)
Strand = Plus / Plus
Query: 86 cggaggtacaaacaagtcacgtgataaataggtgtggttcataataatatatgtatatgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6102 cggaggtacaaacaagtcacgtgataaataggtgtggttcataataatatatgtatatgc 6161
Query: 146 ataagatgcgctatccgaataaaatagtagtatatatttacaagaggatgacggggaggt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6162 ataagatgcgctatccgaataaaatagtagtatatatttacaagaggatgacggggaggt 6221
Query: 206 attcgacgtatctattgtcaacggtgaacagccgttctcattcctggtcctttttcttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222 attcgacgtatctattgtcaacggtgaacagccgttctcattcctggtcctttttcttgg 6281
Query: 266 cttgttctctagcaagtttttgctccgctagtacctgatccaactcttcccttatttgta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6282 cttgttctctagcaagtttttgctccgctagtacctgatccaactcttcccttatttgta 6341
Query: 326 acatactctttggcaaaacaggattaccatcttcatcatactttggaatttcgacatcgg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342 acatactctttggcaaaacaggattaccatcttcatcatactttggaatttcgacatcgg 6401
Query: 386 ttctcaaacccccatccttcttcaactgatcgattacgataggttcgaaaaaccgtgtac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6402 ttctcaaacccccatccttcttcaactgatcgattacgataggttcgaaaaaccgtgtac 6461
Query: 446 cggtgtatacaccgattgcgcaaatgaccgaaaatatcaccacatccatacctctaattc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6462 cggtgtatacaccgattgcgcaaatgaccgaaaatatcaccacatccatacctctaattc 6521
Query: 506 tgcccaccatgttcgttacttttcttacagctcacctatttacctccttcctcaatatat 565
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6522 tgcccaccatgttcgttactttccttacagctcacctatttacctccttcctcaatatat 6581
Query: 566 tatttaatcactcgctcaaaagaaaaggggtcttgaaataaataatcagcagttgcaagt 625
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 6582 tatttaatcactcgctcaaaagaaagggggtctcgaaataaataatcagcagttgcaagt 6641
Query: 626 gtcaccaaatttgtcctgttacctgcctttaactttaaag-aacttgatgttctttaaaa 684
|||||| |||||||||||| ||||| | |||||||| ||| |||||||||| ||||||||
Sbjct: 6642 gtcacc-aatttgtcctgtaacctggc-ttaactttcaagaaacttgatgtcctttaaaa 6699
Query: 685 aatacaacttagtttttttgttcgaaaaag-aagagaaaaagaaattttggggaagtaaa 743
|||||||||||| | ||||| ||||||||| ||||||||||||||| |||| | ||||||
Sbjct: 6700 aatacaacttag-tattttgatcgaaaaagaaagagaaaaagaaatattggcg-agtaaa 6757
Query: 744 aaacataaatctttccgtagaagt 767
| |||||||| ||||||||||||
Sbjct: 6758 agacataaattcttccgtagaagt 6781
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9326
Number of Sequences: 1807
Number of extensions: 9326
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)