BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZH12RM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1788                                                        1463   0.0  

>3x_Contig1788 
          Length = 28493

 Score = 1463 bits (738), Expect = 0.0
 Identities = 812/831 (97%), Gaps = 5/831 (0%)
 Strand = Plus / Minus

                                                                        
Query: 51   tgaaaaggtttaaaaacagtcaaatgtggtatcatttcaatcacaacaagaagctaacga 110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5831 tgaaaaggtttaaaaacagtcaaatgtggtatcatttcaatcacaacaagaagctaacga 5772

                                                                        
Query: 111  taaagagtgcggccaggaatatccaacatctactatacggaaagagaatgttcccatatt 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5771 taaagagtgcggccaggaatatccaacatctactatacggaaagagaatgttcccatatt 5712

                                                                        
Query: 171  atgttcataccattattgctggattagatgaagaaggtaagggggccgtatatctctttc 230
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5711 atgttcataccattattgctggattagatgaagaaggtaagggggccgtata-ctctttc 5653

                                                                        
Query: 231  gatccagtgggctcttatgaaagggaacagtgcagggcaggtggctctgcggcctcctta 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5652 gatccagtgggctcttatgaaagggaacagtgcagggcaggtggctctgcggcctcctta 5593

                                                                        
Query: 291  atcatgccatttttggataaccaagtgaatttaaagaaccagtatgagcctgattctaat 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5592 atcatgccatttttggataaccaagtgaatttaaagaaccagtatgagcctgattctaat 5533

                                                                        
Query: 351  ggtactaaacgcaaagaagttaaatacttaggtgtggaagaagttatcaaattagtaaga 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5532 ggtactaaacgcaaagaagttaaatacttaggtgtggaagaagttatcaaattagtaaga 5473

                                                                        
Query: 411  gatgcgttcacatctgctactgagagacatatcaacgttggtgatggtctagagattttg 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5472 gatgcgttcacatctgctactgagagacatatcaacgttggtgatggtctagagattttg 5413

                                                                        
Query: 471  attgtcacaaaggatggtgtaagaaaagaatacttcgatttaaagagagattaagttaca 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5412 attgtcacaaaggatggtgtaagaaaagaatacttcgatttaaagagagattaagttaca 5353

                                                                        
Query: 531  ctcaattttttttacgaaatctttttgataaagtttctgaatcttagtgtacaatatata 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 ctcaattttttttacgaaatctttttgataaagtttctgaatcttagtgtacaatatata 5293

                                                                        
Query: 591  tatatatatagtaaaatattagatagtgttttattcgcttcgatcaatctgaagaaagct 650
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5292 tatatatatagtaaaatataagatagtgttttattcgcttcgatcaatctgaagaaagct 5233

                                                                        
Query: 651  tccgaactgactgncagtggagatgcanatcctgtcatctattgtggtaattctaaatct 710
            |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5232 tccgaactgactgcaagtggagatgcaaatcctgtcatctattgtggtaattctaaatct 5173

                                                                        
Query: 711  tcaccgagtttgatacctttctgataatagatgttgaagaaatcagagtacactaaagtt 770
             |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5172 ccaccgagtttgataaccttctgataatagatgtagaagaaatcagagtacactaaagtt 5113

                                                                        
Query: 771  ttgatcacaccggtgaaaactgatantttatcgaatcttttcttcggtataatacctcca 830
            |  |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 5112 tgaatcacaccggtgaaaactgataatttatcgaatc-tttcttcggtataatacctcca 5054

                                                               
Query: 831  tatccaattttggaatgtacaagggcacggttatacccccaattcaaaaat 881
            |||||||  ||||||||||||| ||||||| |||| ||||||| |||||||
Sbjct: 5053 tatccaa-attggaatgtacaa-ggcacgg-tataaccccaatgcaaaaat 5006


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,347
Number of Sequences: 1807
Number of extensions: 12347
Number of successful extensions: 1393
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)